|Clustal W and Clustal X version 2.0|
MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ...
bioinformatics 23 (21), 2947-2948, 2007
|Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega|
F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ...
Molecular systems biology 7 (1), 539, 2011
|LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets|
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic Acids Research, 2012
|A benchmark of multiple sequence alignment programs upon structural RNAs|
PP Gardner, A Wilm, S Washietl
Nucleic acids research 33 (8), 2433-2439, 2005
|Fast and sensitive mapping of nanopore sequencing reads with GraphMap|
I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan
Nature communications 7 (1), 1-11, 2016
|Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection|
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
|A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients|
NM Nguyen, CNB Tran, LK Phung, KTH Duong, H le Anh Huynh, J Farrar, ...
Journal of Infectious Diseases, 2012
|An enhanced RNA alignment benchmark for sequence alignment programs|
A Wilm, I Mainz, G Steger
Algorithms for molecular biology 1 (1), 19, 2006
|In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation|
JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ...
Molecular cell 62 (4), 603-617, 2016
|Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare|
KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ...
Nature microbiology 1 (9), 1-10, 2016
|R-Coffee: a method for multiple alignment of non-coding RNA|
A Wilm, DG Higgins, C Notredame
Nucleic acids research 36 (9), e52-e52, 2008
|Sequence embedding for fast construction of guide trees for multiple sequence alignment|
G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins
Algorithms for Molecular Biology 5 (1), 21, 2010
|Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls|
S Wang, KR Chng, A Wilm, S Zhao, KL Yang, N Nagarajan, J He
Proceedings of the National Academy of Sciences 111 (33), 12103-12108, 2014
|Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences|
SH Ong, VU Kukkillaya, A Wilm, C Lay, EXP Ho, L Low, ML Hibberd, ...
PLoS One 8 (4), e60811, 2013
|INC-Seq: accurate single molecule reads using nanopore sequencing|
C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan
GigaScience 5 (1), s13742-016-0140-7, 2016
|StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time|
D Dalli, A Wilm, I Mainz, G Steger
Bioinformatics 22 (13), 1593-1599, 2006
|R-Coffee: a web server for accurately aligning noncoding RNA sequences|
S Moretti, A Wilm, DG Higgins, I Xenarios, C Notredame
Nucleic acids research 36 (suppl_2), W10-W13, 2008
|Tracking dengue virus intra-host genetic diversity during human-to-mosquito transmission|
S Sim, PPK Aw, A Wilm, G Teoh, KDT Hue, NM Nguyen, N Nagarajan, ...
PLoS Negl Trop Dis 9 (9), e0004052, 2015
|Tissue microbiome profiling identifies an enrichment of specific enteric bacteria in Opisthorchis viverrini associated cholangiocarcinoma|
KR Chng, SH Chan, AHQ Ng, C Li, A Jusakul, D Bertrand, A Wilm, ...
EBioMedicine 8, 195-202, 2016
|Making automated multiple alignments of very large numbers of protein sequences|
F Sievers, D Dineen, A Wilm, DG Higgins
Bioinformatics 29 (8), 989-995, 2013