| Clustal W and Clustal X version 2.0 MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ... bioinformatics 23 (21), 2947-2948, 2007 | 26493 | 2007 |
| Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega F Sievers, A Wilm, D Dineen, TJ Gibson, K Karplus, W Li, R Lopez, ... Molecular systems biology 7 (1), 539, 2011 | 9660 | 2011 |
| LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ... Nucleic Acids Research, 2012 | 574 | 2012 |
| A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005 | 327 | 2005 |
| Fast and sensitive mapping of nanopore sequencing reads with GraphMap I Sović, M Šikić, A Wilm, SN Fenlon, S Chen, N Nagarajan Nature communications 7 (1), 1-11, 2016 | 260 | 2016 |
| Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ... Nature methods 12 (7), 623-630, 2015 | 211 | 2015 |
| A randomized, double-blind placebo controlled trial of balapiravir, a polymerase inhibitor, in adult dengue patients NM Nguyen, CNB Tran, LK Phung, KTH Duong, H le Anh Huynh, J Farrar, ... Journal of Infectious Diseases, 2012 | 179 | 2012 |
| An enhanced RNA alignment benchmark for sequence alignment programs A Wilm, I Mainz, G Steger Algorithms for molecular biology 1 (1), 19, 2006 | 174 | 2006 |
| In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ... Molecular cell 62 (4), 603-617, 2016 | 168 | 2016 |
| Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare KR Chng, ASL Tay, C Li, AHQ Ng, J Wang, BK Suri, SA Matta, ... Nature microbiology 1 (9), 1-10, 2016 | 149 | 2016 |
| R-Coffee: a method for multiple alignment of non-coding RNA A Wilm, DG Higgins, C Notredame Nucleic acids research 36 (9), e52-e52, 2008 | 119 | 2008 |
| Sequence embedding for fast construction of guide trees for multiple sequence alignment G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins Algorithms for Molecular Biology 5 (1), 21, 2010 | 110 | 2010 |
| Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls S Wang, KR Chng, A Wilm, S Zhao, KL Yang, N Nagarajan, J He Proceedings of the National Academy of Sciences 111 (33), 12103-12108, 2014 | 109 | 2014 |
| Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences SH Ong, VU Kukkillaya, A Wilm, C Lay, EXP Ho, L Low, ML Hibberd, ... PLoS One 8 (4), e60811, 2013 | 90 | 2013 |
| INC-Seq: accurate single molecule reads using nanopore sequencing C Li, KR Chng, EJH Boey, AHQ Ng, A Wilm, N Nagarajan GigaScience 5 (1), s13742-016-0140-7, 2016 | 87 | 2016 |
| StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time D Dalli, A Wilm, I Mainz, G Steger Bioinformatics 22 (13), 1593-1599, 2006 | 78 | 2006 |
| R-Coffee: a web server for accurately aligning noncoding RNA sequences S Moretti, A Wilm, DG Higgins, I Xenarios, C Notredame Nucleic acids research 36 (suppl_2), W10-W13, 2008 | 61 | 2008 |
| Tracking dengue virus intra-host genetic diversity during human-to-mosquito transmission S Sim, PPK Aw, A Wilm, G Teoh, KDT Hue, NM Nguyen, N Nagarajan, ... PLoS Negl Trop Dis 9 (9), e0004052, 2015 | 59 | 2015 |
| Tissue microbiome profiling identifies an enrichment of specific enteric bacteria in Opisthorchis viverrini associated cholangiocarcinoma KR Chng, SH Chan, AHQ Ng, C Li, A Jusakul, D Bertrand, A Wilm, ... EBioMedicine 8, 195-202, 2016 | 54 | 2016 |
| Making automated multiple alignments of very large numbers of protein sequences F Sievers, D Dineen, A Wilm, DG Higgins Bioinformatics 29 (8), 989-995, 2013 | 54 | 2013 |
des higginsUniversity College DublinVerified email at ucd.ie
