Florian P Breitwieser
Florian P Breitwieser
Senior Software Engineer at SOPHiA Genetics
Verified email at jhu.edu
TitleCited byYear
Centrifuge: rapid and sensitive classification of metagenomic sequences
D Kim, L Song, FP Breitwieser, SL Salzberg
Genome research 26 (12), 1721-1729, 2016
2282016
General statistical modeling of data from protein relative expression isobaric tags
FP Breitwieser, A M ller, L Dayon, T K cher, A Hainard, PM Pichler, ...
Journal of Proteome Research, 2011
1162011
Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML
GE Winter, U Rix, SM Carlson, KV Gleixner, F Grebien, M Gridling, ...
Nature chemical biology 8 (11), 905, 2012
902012
Proteomic analysis of human cataract aqueous humour: Comparison of one-dimensional gel LCMS with two-dimensional LCMS of unlabelled and iTRAQ®-labelled specimens
KL Bennett, M Funk, M Tschernutter, FP Breitwieser, M Planyavsky, ...
Journal of proteomics 74 (2), 151-166, 2011
832011
Initial characterization of the human central proteome
TR Burkard, M Planyavsky, I Kaupe, FP Breitwieser, T Bürckstümmer, ...
BMC systems biology 5 (1), 17, 2011
772011
A comprehensive target selectivity survey of the BCR-ABL kinase inhibitor INNO-406 by kinase profiling and chemical proteomics in chronic myeloid leukemia cells
U Rix, LLR Rix, AS Terker, NV Fernbach, O Hantschel, M Planyavsky, ...
Leukemia 24 (1), 44-50, 2009
742009
Bracken: estimating species abundance in metagenomics data
J Lu, FP Breitwieser, P Thielen, SL Salzberg
PeerJ Computer Science 3, e104, 2017
712017
A review of methods and databases for metagenomic classification and assembly
FP Breitwieser, J Lu, SL Salzberg
Briefings in bioinformatics, 2017
702017
Next-generation sequencing in neuropathologic diagnosis of infections of the nervous system
SL Salzberg, FP Breitwieser, A Kumar, H Hao, P Burger, FJ Rodriguez, ...
Neurology-Neuroimmunology Neuroinflammation 3 (4), e251, 2016
682016
CD4+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2
N Boucheron, R Tschismarov, L Goeschl, MA Moser, S Lagger, ...
Nature immunology 15 (5), 439, 2014
432014
The lipid-modifying enzyme SMPDL3B negatively regulates innate immunity
LX Heinz, CL Baumann, MS Köberlin, B Snijder, R Gawish, G Shui, ...
Cell reports 11 (12), 1919-1928, 2015
382015
Using iTRAQ combined with tandem affinity purification to enhance low-abundance proteins associated with somatically mutated EGFR core complexes in lung cancer
EB Haura, A Müller, FP Breitwieser, J Li, F Grebien, J Colinge, ...
Journal of proteome research 10 (1), 182-190, 2010
372010
Quantitative proteomics of aqueous and vitreous fluid from patients with idiopathic epiretinal membranes
A Pollreisz, M Funk, FP Breitwieser, K Parapatics, S Sacu, ...
Experimental eye research 108, 48-58, 2013
352013
Acid elution and one-dimensional shotgun analysis on an Orbitrap mass spectrometer: an application to drug affinity chromatography
NV Fernbach, M Planyavsky, A Müller, FP Breitwieser, J Colinge, U Rix, ...
Journal of proteome research 8 (10), 4753-4765, 2009
322009
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
M Pertea, A Shumate, G Pertea, A Varabyou, FP Breitwieser, YC Chang, ...
Genome biology 19 (1), 208, 2018
312018
A chemical biology approach identifies AMPK as a modulator of melanoma oncogene MITF
V Borgdorff, U Rix, GE Winter, M Gridling, AC Müller, FP Breitwieser, ...
Oncogene 33 (19), 2531-2539, 2014
302014
A computational approach to analyze the mechanism of action of the kinase inhibitor bafetinib
TR Burkard, U Rix, FP Breitwieser, G Superti-Furga, J Colinge
PLoS Computational Biology 6 (11), e1001001, 2010
292010
Germline RBBP6 mutations in familial myeloproliferative neoplasms
AS Harutyunyan, R Giambruno, C Krendl, A Stukalov, T Klampfl, T Berg, ...
Blood 127 (3), 362-365, 2016
272016
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
FP Breitwieser, DN Baker, SL Salzberg
Genome biology 19 (1), 198, 2018
262018
Pavian: Interactive analysis of metagenomics data for microbiomics and pathogen identification
FP Breitwieser, SL Salzberg
BioRxiv, 084715, 2016
222016
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Articles 1–20