Yasuo Tabei

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Yoshihiro YamanishiKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Masaaki KoteraPreferred Networks Inc., | Tokyo Medical and Dental University | University of TokyoVerified email at preferred.jp
Kiyoshi AsaiProfessor of Computational Biology, University of TokyoVerified email at k.u-tokyo.ac.jp
Hiroshi SakamotoKyushu Institute of TechnologyVerified email at ai.kyutech.ac.jp
Simon J. PuglisiAssociate Professor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Kana ShimizuWaseda University, National Institute of Advanced Industrial Science and TechnologyVerified email at waseda.jp
Kentaro TomiiAISTVerified email at aist.go.jp
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
djamal belazzouguiCERISTVerified email at cerist.dz
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Juha KärkkäinenDepartment of Computer scienceVerified email at cs.helsinki.fi
Travis GagieAssociate Professor at Dalhousie UniversityVerified email at dal.ca
Alberto Ordóñez PereiraPinterestVerified email at pinterest.com
Paweł GawrychowskiUniversity of WrocławVerified email at cs.uni.wroc.pl
Moriya YukiDatabase Center for Life ScienceVerified email at dbcls.rois.ac.jp
Kazuhiro TakemotoKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Naoya TakeishiHaute école specialisée Suisse occidentale (HES-SO)Verified email at hesge.ch
Yoshinobu KawaharaKyushu University / RIKENVerified email at imi.kyushu-u.ac.jp
Kunihiko SadakaneProfessor at Department of Mathematical Informatics, The University of TokyoVerified email at mist.i.u-tokyo.ac.jp

Yasuo Tabei

Unit leader at RIKEN-AIP

Verified email at riken.go.jp - Homepage

Machine learning Data structure Bioinformatics Chemoinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A fast structural multiple alignment method for long RNA sequences Y Tabei, H Kiryu, T Kin, K Asai BMC bioinformatics 9 (1), 1-17, 2008	123	2008
Murlet: a practical multiple alignment tool for structural RNA sequences H Kiryu, Y Tabei, T Kin, K Asai Bioinformatics 23 (13), 1588-1598, 2007	98	2007
Identification of chemogenomic features from drug–target interaction networks using interpretable classifiers Y Tabei, E Pauwels, V Stoven, K Takemoto, Y Yamanishi Bioinformatics 28 (18), i487-i494, 2012	84	2012
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments Y Tabei, K Tsuda, T Kin, K Asai Bioinformatics 22 (14), 1723-1729, 2006	72	2006
Bayesian dynamic mode decomposition. N Takeishi, Y Kawahara, Y Tabei, T Yairi IJCAI, 2814-2821, 2017	59	2017
PoSSuM: a database of similar protein–ligand binding and putative pockets JI Ito, Y Tabei, K Shimizu, K Tsuda, K Tomii Nucleic acids research 40 (D1), D541-D548, 2012	54	2012
Queries on LZ-bounded encodings D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ... 2015 Data Compression Conference, 83-92, 2015	51	2015
Scalable prediction of compound-protein interactions using minwise hashing Y Tabei, Y Yamanishi BMC systems biology 7 (6), 1-13, 2013	47	2013
Improved ESP-index: a practical self-index for highly repetitive texts Y Takabatake, Y Tabei, H Sakamoto International Symposium on Experimental Algorithms, 2014	46	2014
Fully-online grammar compression S Maruyama, Y Tabei, H Sakamoto, K Sadakane International Symposium on String Processing and Information Retrieval, 218-229, 2013	44	2013
Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures R Sawada, M Iwata, Y Tabei, H Yamato, Y Yamanishi Scientific reports 8 (1), 1-9, 2018	42	2018
Access, rank, and select in grammar-compressed strings D Belazzougui, PH Cording, SJ Puglisi, Y Tabei Algorithms-ESA 2015, 142-154, 2015	38	2015
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets M Kotera, Y Tabei, Y Yamanishi, T Tokimatsu, S Goto Bioinformatics 29 (13), i135-i144, 2013	35	2013
PDB‐scale analysis of known and putative ligand‐binding sites with structural sketches JI Ito, Y Tabei, K Shimizu, K Tomii, K Tsuda Proteins: Structure, Function, and Bioinformatics 80 (3), 747-763, 2012	33	2012
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics M Kotera, Y Tabei, Y Yamanishi, Y Moriya, T Tokimatsu, M Kanehisa, ... BMC systems biology 7 (6), 1-17, 2013	31	2013
Inferring protein domains associated with drug side effects based on drug-target interaction network H Iwata, S Mizutani, Y Tabei, M Kotera, S Goto, Y Yamanishi BMC systems biology 7 (6), 1-11, 2013	29	2013
Scalable partial least squares regression on grammar-compressed data matrices Y Tabei, H Saigo, Y Yamanishi, S J. Puglisi Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge …, 2016	28	2016
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices Y Tabei, H Saigo, Y Yamanishi, SJ Puglisi	28	2016
Fully online grammar compression in constant space S Maruyama, Y Tabei 2014 Data Compression Conference, 173-182, 2014	24	2014
A succinct grammar compression Y Tabei, Y Takabatake, H Sakamoto Annual Symposium on Combinatorial Pattern Matching, 235-246, 2013	23	2013

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