Anne Kupczok
Anne Kupczok
Bioinformatics Group, Wageningen University & Research
Verified email at - Homepage
Cited by
Cited by
A consistent phylogenetic backbone for the fungi
I Ebersberger, R de Matos Simoes, A Kupczok, M Gube, E Kothe, K Voigt, ...
Molecular biology and evolution 29 (5), 1319-1334, 2012
Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
A Kupczok, HA Schmidt, A Von Haeseler
Algorithms for Molecular Biology 5 (1), 1-17, 2010
Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels
R Ansorge, S Romano, L Sayavedra, MÁG Porras, A Kupczok, ...
Nature microbiology 4 (12), 2487-2497, 2019
A phage protein aids bacterial symbionts in eukaryote immune evasion
MT Jahn, K Arkhipova, SM Markert, C Stigloher, T Lachnit, L Pita, ...
Cell Host & Microbe 26 (4), 542-550. e5, 2019
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades
A Kupczok, H Neve, KD Huang, MP Hoeppner, KJ Heller, CMAP Franz, ...
Molecular Biology and Evolution 35 (5), 1147-1159, 2018
Segregational drift and the interplay between plasmid copy number and evolvability
J Ilhan, A Kupczok, C Woehle, T Wein, NF Hülter, P Rosenstiel, G Landan, ...
Molecular biology and evolution 36 (3), 472-486, 2019
The contribution of genetic recombination to CRISPR array evolution
A Kupczok, G Landan, T Dagan
Genome biology and evolution 7 (7), 1925-1939, 2015
Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated
DR Picazo, T Dagan, R Ansorge, JM Petersen, N Dubilier, A Kupczok
The ISME Journal 13, 2954–2968, 2019
Methanosarcina spherical virus, a novel archaeal lytic virus targeting methanosarcina strains
K Weidenbach, L Nickel, H Neve, OS Alkhnbashi, S Künzel, A Kupczok, ...
Journal of virology 91 (22), e00955-17, 2017
An exact algorithm for the geodesic distance between phylogenetic trees
A Kupczok, AV Haeseler, S Klaere
Journal of Computational Biology 15 (6), 577-591, 2008
Marine genomics: News and views
ÂM Ribeiro, AD Foote, A Kupczok, B Frazão, MT Limborg, R Piñeiro, ...
Marine genomics 31, 1-8, 2017
Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts
M Godfroid, T Dagan, A Kupczok
Genome biology and evolution 10 (8), 1920-1926, 2018
Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria
R Koch, A Kupczok, K Stucken, J Ilhan, K Hammerschmidt, T Dagan
BMC evolutionary biology 17 (1), 1-11, 2017
Split-based computation of majority-rule supertrees
A Kupczok
BMC evolutionary biology 11 (1), 1-13, 2011
Probabilistic models for CRISPR spacer content evolution
A Kupczok, JP Bollback
BMC evolutionary biology 13 (1), 1-18, 2013
Determinants of simulated RNA evolution
A Kupczok, P Dittrich
Journal of theoretical biology 238 (3), 726-735, 2006
Complete genome sequence of the novel phage MG-B1 infecting Bacillus weihenstephanensis
RAF Redondo, A Kupczok, G Stift, JP Bollback
Genome announcements 1 (3), e00216-13, 2013
Characterization of the lytic archaeal virus Drs3 infecting Methanobacterium formicicum
S Wolf, MA Fischer, A Kupczok, J Reetz, T Kern, RA Schmitz, M Rother
Archives of virology 164 (3), 667-674, 2019
Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak
M Godfroid, T Dagan, M Merker, TA Kohl, R Diel, FP Maurer, S Niemann, ...
PLoS Pathogens 16 (9), e1008357, 2020
A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity
G Sengoelge, W Winnicki, A Kupczok, A von Haeseler, M Schuster, ...
BMC genomics 15 (1), 1-16, 2014
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