Smoothened variants explain the majority of drug resistance in basal cell carcinoma SX Atwood, KY Sarin, RJ Whitson, JR Li, G Kim, M Rezaee, MS Ally, J Kim, ... Cancer cell 27 (3), 342-353, 2015 | 429 | 2015 |
TNBCtype: a subtyping tool for triple-negative breast cancer X Chen, J Li, WH Gray, BD Lehmann, JA Bauer, Y Shyr, JA Pietenpol Cancer informatics 11, CIN. S9983, 2012 | 271 | 2012 |
Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data Y Guo, Q Sheng, J Li, F Ye, DC Samuels, Y Shyr PloS one 8 (8), e71462, 2013 | 227 | 2013 |
Human COL7A1-corrected induced pluripotent stem cells for the treatment of recessive dystrophic epidermolysis bullosa V Sebastiano, HH Zhen, B Haddad, E Bashkirova, SP Melo, P Wang, ... Science translational medicine 6 (264), 264ra163-264ra163, 2014 | 220 | 2014 |
The effect of strand bias in Illumina short-read sequencing data Y Guo, J Li, CI Li, J Long, DC Samuels, Y Shyr BMC genomics 13, 1-11, 2012 | 169 | 2012 |
RAS/MAPK activation drives resistance to Smo inhibition, metastasis, and tumor evolution in Shh pathway–dependent tumors X Zhao, T Ponomaryov, KJ Ornell, P Zhou, SK Dabral, E Pak, W Li, ... Cancer research 75 (17), 3623-3635, 2015 | 155 | 2015 |
Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data Q Liu, Y Guo, J Li, J Long, B Zhang, Y Shyr BMC genomics 13, 1-8, 2012 | 145 | 2012 |
High expression of MAGE-A9 correlates with unfavorable survival in hepatocellular carcinoma X Gu, M Fu, Z Ge, F Zhan, Y Ding, H Ni, W Zhang, Y Zhu, X Tang, L Xiong, ... Scientific reports 4 (1), 6625, 2014 | 138 | 2014 |
MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis Y Guo, J Li, CI Li, Y Shyr, DC Samuels Bioinformatics 29 (9), 1210-1211, 2013 | 105 | 2013 |
DOSim: an R package for similarity between diseases based on disease ontology J Li, B Gong, X Chen, T Liu, C Wu, F Zhang, C Li, X Li, S Rao, X Li BMC bioinformatics 12, 1-10, 2011 | 103 | 2011 |
Multi-perspective quality control of Illumina exome sequencing data using QC3 Y Guo, S Zhao, Q Sheng, F Ye, J Li, B Lehmann, J Pietenpol, DC Samuels, ... Genomics 103 (5-6), 323-328, 2014 | 95 | 2014 |
Noncanonical hedgehog pathway activation through SRF–MKL1 promotes drug resistance in basal cell carcinomas RJ Whitson, A Lee, NM Urman, A Mirza, CY Yao, AS Brown, JR Li, ... Nature medicine 24 (3), 271-281, 2018 | 90 | 2018 |
TFAP2C-and p63-dependent networks sequentially rearrange chromatin landscapes to drive human epidermal lineage commitment L Li, Y Wang, JL Torkelson, G Shankar, JM Pattison, HH Zhen, F Fang, ... Cell Stem Cell 24 (2), 271-284. e8, 2019 | 80 | 2019 |
High expression of inositol polyphosphate phosphatase-like 1 associates with unfavorable survival in hepatocellular carcinoma M Fu, X Gu, H Ni, W Zhang, F Chang, L Gong, X Chen, J Li, L Qiu, C Shi, ... International journal of clinical and experimental pathology 6 (11), 2515, 2013 | 55 | 2013 |
Comparison of Nanostring nCounter® Data on FFPE Colon Cancer Samples and Affymetrix Microarray Data on Matched Frozen Tissues X Chen, NG Deane, KB Lewis, J Li, J Zhu, MK Washington, ... PloS one 11 (5), e0153784, 2016 | 53 | 2016 |
TIMP-3 expression associates with malignant behaviors and predicts favorable survival in HCC X Gu, M Fu, Y Ding, H Ni, W Zhang, Y Zhu, X Tang, L Xiong, J Li, L Qiu, ... PLoS One 9 (8), e106161, 2014 | 39 | 2014 |
High SHIP2 expression indicates poor survival in colorectal cancer J Yang, M Fu, Y Ding, Y Weng, W Fan, X Pu, Z Ge, F Zhan, H Ni, W Zhang, ... Disease markers 2014, 2014 | 29 | 2014 |
Rolling the genetic dice: neutral and deleterious smoothened mutations in drug-resistant basal cell carcinoma SX Atwood, KY Sarin, JR Li, C Yao, NM Urman, ALS Chang, JY Tang, ... The Journal of investigative dermatology 135 (8), 2138, 2015 | 26 | 2015 |
Mutations in the kinetochore gene KNSTRN in basal cell carcinoma PD Jaju, CB Nguyen, AM Mah, SX Atwood, J Li, A Zia, ALS Chang, ... The Journal of investigative dermatology 135 (12), 3197, 2015 | 22 | 2015 |
Evaluation of allele frequency estimation using pooled sequencing data simulation Y Guo, DC Samuels, J Li, T Clark, CI Li, Y Shyr The Scientific World Journal 2013, 2013 | 22 | 2013 |