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Xiaojie Qiu
Xiaojie Qiu
Assistant Professor, BASE, Department of Genetics & Computer Science, Stanford
Bestätigte E-Mail-Adresse bei stanford.edu - Startseite
Titel
Zitiert von
Zitiert von
Jahr
Reversed graph embedding resolves complex single-cell trajectories
X Qiu, Q Mao, Y Tang, L Wang, R Chawla, HA Pliner, C Trapnell
Nature methods 14 (10), 979-982, 2017
35522017
The single-cell transcriptional landscape of mammalian organogenesis
J Cao, M Spielmann, X Qiu, X Huang, DM Ibrahim, AJ Hill, F Zhang, ...
Nature 566 (7745), 496-502, 2019
31192019
Single-cell mRNA quantification and differential analysis with Census
X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell
Nature methods 14 (3), 309-315, 2017
15032017
Comprehensive single-cell transcriptional profiling of a multicellular organism
J Cao, JS Packer, V Ramani, DA Cusanovich, C Huynh, R Daza, X Qiu, ...
Science 357 (6352), 661-667, 2017
14372017
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays
A Chen, S Liao, M Cheng, K Ma, L Wu, Y Lai, X Qiu, J Yang, J Xu, S Hao, ...
Cell 185 (10), 1777-1792. e21, 2022
9052022
Cicero predicts cis-regulatory DNA interactions from single-cell chromatin accessibility data
HA Pliner, JS Packer, JL McFaline-Figueroa, DA Cusanovich, RM Daza, ...
Molecular cell 71 (5), 858-871. e8, 2018
7052018
The cis-regulatory dynamics of embryonic development at single-cell resolution
DA Cusanovich, JP Reddington, DA Garfield, RM Daza, D Aghamirzaie, ...
Nature 555 (7697), 538-542, 2018
3632018
Mapping transcriptomic vector fields of single cells
X Qiu, Y Zhang, JD Martin-Rufino, C Weng, S Hosseinzadeh, D Yang, ...
Cell 185 (4), 690-711. e45, 2022
325*2022
Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis
NK Hanchate, K Kondoh, Z Lu, D Kuang, X Ye, X Qiu, L Pachter, ...
Science 350 (6265), 1251-1255, 2015
2332015
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution
D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min, R Ho, W Wu, ...
Cell 185 (11), 1905-1923. e25, 2022
2082022
Inferring causal gene regulatory networks from coupled single-cell expression dynamics using scribe
X Qiu, A Rahimzamani, L Wang, B Ren, Q Mao, T Durham, ...
Cell systems 10 (3), 265-274. e11, 2020
181*2020
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition
JL McFaline-Figueroa, AJ Hill, X Qiu, D Jackson, J Shendure, C Trapnell
Nature genetics 51 (9), 1389-1398, 2019
1672019
Single-cell Stereo-seq reveals induced progenitor cells involved in axolotl brain regeneration
X Wei, S Fu, H Li, Y Liu, S Wang, W Feng, Y Yang, X Liu, YY Zeng, ...
Science 377 (6610), eabp9444, 2022
1622022
Massively parallel and time-resolved RNA sequencing in single cells with scNT-seq
Q Qiu, P Hu, X Qiu, KW Govek, PG Cámara, H Wu
Nature methods 17 (10), 991-1001, 2020
1492020
Thyroid hormone regulates distinct paths to maturation in pigment cell lineages
LM Saunders, AK Mishra, AJ Aman, VM Lewis, MB Toomey, JS Packer, ...
Elife 8, e45181, 2019
1322019
Aligning single-cell developmental and reprogramming trajectories identifies molecular determinants of myogenic reprogramming outcome
D Cacchiarelli, X Qiu, S Srivatsan, A Manfredi, M Ziller, E Overbey, ...
Cell Systems 7 (3), 258-268. e3, 2018
842018
Massively parallel base editing to map variant effects in human hematopoiesis
JD Martin-Rufino, N Castano, M Pang, EI Grody, S Joubran, A Caulier, ...
Cell 186 (11), 2456-2474. e24, 2023
712023
Deciphering cell states and genealogies of human haematopoiesis
C Weng, F Yu, D Yang, M Poeschla, LA Liggett, MG Jones, X Qiu, ...
Nature 627 (8003), 389-398, 2024
462024
Spatiotemporally resolved transcriptomics reveals the subcellular RNA kinetic landscape
J Ren, H Zhou, H Zeng, CK Wang, J Huang, X Qiu, X Sui, Q Li, X Wu, ...
Nature Methods 20 (5), 695-705, 2023
352023
From understanding the development landscape of the canonical fate-switch pair to constructing a dynamic landscape for two-step neural differentiation
X Qiu, S Ding, T Shi
PloS one 7 (12), e49271, 2012
352012
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