Jason Ernst
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 2012
120782012
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
40692015
Mapping and analysis of chromatin state dynamics in nine human cell types
J Ernst, P Kheradpour, TS Mikkelsen, N Shoresh, LD Ward, CB Epstein, ...
Nature 473 (7345), 43-49, 2011
27542011
ChromHMM: automating chromatin-state discovery and characterization
J Ernst, M Kellis
Nature Methods 9 (3), 215-216, 2012
17052012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
12412011
Discovery and characterization of chromatin states for systematic annotation of the human genome
J Ernst, M Kellis
Nature Biotechnology 28, 817-825, 2010
10702010
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
10412011
STEM: a tool for the analysis of short time series gene expression data
J Ernst, Z Bar-Joseph
BMC bioinformatics 7 (1), 1-11, 2006
9422006
Identification of functional elements and regulatory circuits by Drosophila modENCODE
S Roy, J Ernst, PV Kharchenko, P Kheradpour, N Negre, ML Eaton, ...
Science 330 (6012), 1787-1797, 2010
9022010
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ...
Nature 471 (7339), 480-485, 2011
8532011
Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci
PL De Jager, G Srivastava, K Lunnon, J Burgess, LC Schalkwyk, L Yu, ...
Nature neuroscience 17 (9), 1156-1163, 2014
6232014
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research, gks1284, 2013
5092013
Clustering short time series gene expression data
J Ernst, GJ Nau, Z Bar-Joseph
Bioinformatics 21 (suppl_1), i159-i168, 2005
5042005
Chromosome conformation elucidates regulatory relationships in developing human brain
H Won, L de La Torre-Ubieta, JL Stein, NN Parikshak, J Huang, ...
Nature 538 (7626), 523-527, 2016
3532016
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ...
Cell 147 (7), 1628-1639, 2011
3482011
Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity
QK Beg, A Vazquez, J Ernst, MA de Menezes, Z Bar-Joseph, AL Barabási, ...
Proceedings of the National Academy of Sciences 104 (31), 12663-12668, 2007
3142007
Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
J Ernst, M Kellis
Nature biotechnology 33 (4), 364-376, 2015
2932015
Cooperative binding of transcription factors orchestrates reprogramming
C Chronis, P Fiziev, B Papp, S Butz, G Bonora, S Sabri, J Ernst, K Plath
Cell 168 (3), 442-459. e20, 2017
2892017
Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma
JL Wiggs, BL Yaspan, MA Hauser, JH Kang, RR Allingham, LM Olson, ...
PLoS Genetics 8 (4), e1002654, 2012
2642012
Chromatin-state discovery and genome annotation with ChromHMM
J Ernst, M Kellis
Nature protocols 12 (12), 2478, 2017
2602017
The system can't perform the operation now. Try again later.
Articles 1–20