Daniel Buchan
Daniel Buchan
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Zitiert von
Zitiert von
The tomato genome sequence provides insights into fleshy fruit evolution
S Sato, S Tabata, H Hirakawa, E Asamizu, K Shirasawa, S Isobe, ...
Nature 485 (7400), 635-641, 2012
Scalable web services for the PSIPRED Protein Analysis Workbench
DWA Buchan, F Minneci, TCO Nugent, K Bryson, DT Jones
Nucleic acids research 41 (W1), W349-W357, 2013
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
The PSIPRED protein analysis workbench: 20 years on
DWA Buchan, DT Jones
Nucleic acids research 47 (W1), W402-W407, 2019
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
DT Jones, DWA Buchan, D Cozzetto, M Pontil
Bioinformatics 28 (2), 184-190, 2012
Protein annotation and modelling servers at University College London
DWA Buchan, SM Ward, AE Lobley, TCO Nugent, K Bryson, DT Jones
Nucleic acids research 38 (suppl_2), W563-W568, 2010
Evolution of protein superfamilies and bacterial genome size
JAG Ranea, DWA Buchan, JM Thornton, CA Orengo
Journal of molecular biology 336 (4), 871-887, 2004
The CATH protein family database: a resource for structural and functional annotation of genomes
CA Orengo, JE Bray, DWA Buchan, A Harrison, D Lee, FMG Pearl, ...
PROTEOMICS: International Edition 2 (1), 11-21, 2002
Predictions of hot spot residues at protein-protein interfaces using support vector machines
S Lise, D Buchan, M Pontil, DT Jones
PLoS one 6 (2), e16774, 2011
A snapshot of the emerging tomato genome sequence
LAL Mueller, RK Tanksley, SD Giovannoni, JJ White, R Vrebalov, J Fei, ...
The Plant Genome 2 (1), 78, 2009
Protein function prediction by massive integration of evolutionary analyses and multiple data sources
D Cozzetto, DWA Buchan, K Bryson, DT Jones
BMC bioinformatics 14, 1-11, 2013
Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database
DWA Buchan, AJ Shepherd, D Lee, FMG Pearl, SCG Rison, JM Thornton, ...
Genome research 12 (3), 503-514, 2002
A rapid classification protocol for the CATH Domain Database to support structural genomics
FMG Pearl, N Martin, JE Bray, DWA Buchan, AP Harrison, D Lee, ...
Nucleic Acids Research 29 (1), 223-227, 2001
The CATH extended protein‐family database: Providing structural annotations for genome sequences
FMG Pearl, D Lee, JE Bray, DWA Buchan, AJ Shepherd, CA Orengo
Protein Science 11 (2), 233-244, 2002
Improved protein contact predictions with the MetaPSICOV2 server in CASP12
DWA Buchan, DT Jones
PROTEINS: structure, function, and bioinformatics 86, 78-83, 2018
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains
TE Lewis, I Sillitoe, A Andreeva, TL Blundell, DWA Buchan, C Chothia, ...
Nucleic acids research 41 (D1), D499-D507, 2012
EigenTHREADER: analogous protein fold recognition by efficient contact map threading
DWA Buchan, DT Jones
Bioinformatics 33 (17), 2684-2690, 2017
Genome3D: exploiting structure to help users understand their sequences
TE Lewis, I Sillitoe, A Andreeva, TL Blundell, DWA Buchan, C Chothia, ...
Nucleic Acids Research 43 (D1), D382-D386, 2015
A structural perspective on genome evolution
D Lee, A Grant, D Buchan, C Orengo
Current opinion in structural biology 13 (3), 359-369, 2003
Gene3D: structural assignments for the biologist and bioinformaticist alike
DWA Buchan, SCG Rison, JE Bray, D Lee, F Pearl, JM Thornton, ...
Nucleic acids research 31 (1), 469-473, 2003
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