Angelika Merkel
Angelika Merkel
Centro Nacional de Análisis Genómico (CNAG-CRG)
Verified email at cnag.crg.es
TitleCited byYear
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
9689*2012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
33092012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
31352012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
11172011
Genome analysis of the platypus reveals unique signatures of evolution
WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ...
Nature 453 (7192), 175, 2008
6712008
Whole-genome fingerprint of the DNA methylome during human B cell differentiation
M Kulis, A Merkel, S Heath, AC Queirós, RP Schuyler, G Castellano, ...
Nature genetics 47 (7), 746, 2015
1642015
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
X Agirre, G Castellano, M Pascual, S Heath, M Kulis, V Segura, ...
Genome research 25 (4), 478-487, 2015
862015
Detecting short tandem repeats from genome data: opening the software black box
A Merkel, N Gemmell
Briefings in bioinformatics 9 (5), 355-366, 2008
722008
Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
J Feichtinger, I Hernández, C Fischer, M Hanscho, N Auer, M Hackl, ...
Biotechnology and bioengineering 113 (10), 2241-2253, 2016
622016
Decoding the DNA methylome of mantle cell lymphoma in the light of the entire B cell lineage
AC Queirós, R Beekman, R Vilarrasa-Blasi, M Duran-Ferrer, G Clot, ...
Cancer Cell 30 (5), 806-821, 2016
532016
Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types
S Ecker, L Chen, V Pancaldi, FO Bagger, JM Fernández, ...
Genome biology 18 (1), 18, 2017
522017
The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia
R Beekman, V Chapaprieta, N Russińol, R Vilarrasa-Blasi, ...
Nature medicine 24 (6), 868-880, 2018
312018
Grape RNA-Seq analysis pipeline environment
DG Knowles, M Röder, A Merkel, R Guigó
Bioinformatics 29 (5), 614-621, 2013
282013
Distinct trends of DNA methylation patterning in the innate and adaptive immune systems
RP Schuyler, A Merkel, E Raineri, L Altucci, E Vellenga, JHA Martens, ...
Cell reports 17 (8), 2101-2111, 2016
272016
Detecting microsatellites in genome data: variance in definitions and bioinformatic approaches cause systematic bias
A Merkel, NJ Gemmell, A Merkel, NJ Gemmell
Evolutionary Bioinformatics 4, EBO. S420, 2008
242008
Dynamics of transcription regulation in human bone marrow myeloid differentiation to mature blood neutrophils
L Grassi, F Pourfarzad, S Ullrich, A Merkel, F Were, ...
Cell reports 24 (10), 2784-2794, 2018
182018
Chromatin-based classification of genetically heterogeneous AMLs into two distinct subtypes with diverse stemness phenotypes
G Yi, ATJ Wierenga, F Petraglia, P Narang, EM Janssen-Megens, ...
Cell reports 26 (4), 1059-1069. e6, 2019
112019
Evolution of microsatellite DNA
IMV Jentzsch, ATM Bagshaw, E Buschiazzo, A Merkel, NJ Gemmell
eLS, 2001
112001
Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
I Hernandez, H Dhiman, G Klanert, V Jadhav, N Auer, M Hanscho, ...
Biotechnology and bioengineering 116 (3), 677-692, 2019
82019
gemBS: high throughput processing for DNA methylation data from bisulfite sequencing
A Merkel, M Fernández-Callejo, E Casals, S Marco-Sola, R Schuyler, ...
Bioinformatics 35 (5), 737-742, 2019
82019
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