Jaap Heringa
Jaap Heringa
Professor of Bioinformatics, Vrije Universiteit Amsterdam
Verified email at vu.nl
Title
Cited by
Cited by
Year
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
73272000
The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Scientific data 3 (1), 1-9, 2016
39622016
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa
Nucleic acids research 33 (suppl_2), W289-W294, 2005
4582005
An analysis of protein domain linkers: their classification and role in protein folding
RA George, J Heringa
Protein Engineering, Design and Selection 15 (11), 871-879, 2002
3962002
A simple and fast secondary structure prediction method using hidden neural networks
K Lin, VA Simossis, WR Taylor, J Heringa
Bioinformatics 21 (2), 152-159, 2005
3202005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid
TJ Gibson, JD Thompson, J Heringa
FEBS letters 324 (3), 361-366, 1993
2381993
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment
J Heringa
Computers & chemistry 23 (3-4), 341-364, 1999
1791999
’t Hoen PAC
MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...
Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL …, 2016
1662016
General secretion signal for the mycobacterial type VII secretion pathway
MH Daleke, R Ummels, P Bawono, J Heringa, ...
Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012
1632012
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils
D Langosch, J Heringa
Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998
1611998
Tracking repeats using significance and transitivity
R Szklarczyk, J Heringa
Bioinformatics 20 (suppl_1), i311-i317, 2004
1452004
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1242005
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2010
1232010
The ontogeny of a dominance hierarchy in colonies of the bumblebee Bombus terrestris (Hymenoptera, Apidae)
A Van Doorn, J Heringa
Insectes sociaux 33 (1), 3-25, 1986
1191986
Side-chain clusters in protein structures and their role in protein folding
J Heringa, P Argos
Journal of molecular biology 220 (1), 151-171, 1991
1161991
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1132008
SnapDRAGON: a method to delineate protein structural domains from sequence data
RA George, J Heringa
Journal of molecular biology 316 (3), 839-851, 2002
1122002
A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%
PK Mehta, J Heringa, P Argos
Protein Science 4 (12), 2517-2525, 1995
1081995
Three-dimensional domain duplication, swapping and stealing
J Heringa, WR Taylor
Current opinion in structural biology 7 (3), 416-421, 1997
1071997
KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism
TJ Gibson, PM Rice, JD Thompson, J Heringa
Trends in biochemical sciences 18 (9), 331-333, 1993
921993
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