Jaap Heringa
Jaap Heringa
Professor of Bioinformatics, Vrije Universiteit Amsterdam
Verified email at vu.nl
Title
Cited by
Cited by
Year
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
71832000
The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Scientific data 3 (1), 1-9, 2016
34302016
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa
Nucleic acids research 33 (suppl_2), W289-W294, 2005
4422005
An analysis of protein domain linkers: their classification and role in protein folding
RA George, J Heringa
Protein Engineering, Design and Selection 15 (11), 871-879, 2002
3842002
A simple and fast secondary structure prediction method using hidden neural networks
K Lin, VA Simossis, WR Taylor, J Heringa
Bioinformatics 21 (2), 152-159, 2005
3192005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid
TJ Gibson, JD Thompson, J Heringa
FEBS letters 324 (3), 361-366, 1993
2381993
’t Hoen PAC
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Hooft R, Kuhn T, Kok R, Kok J, Lusher SJ, Martone ME, Mons A, Packer AL …, 2016
1822016
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment
J Heringa
Computers & chemistry 23 (3-4), 341-364, 1999
1781999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils
D Langosch, J Heringa
Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998
1611998
General secretion signal for the mycobacterial type VII secretion pathway
MH Daleke, R Ummels, P Bawono, J Heringa, ...
Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012
1512012
Tracking repeats using significance and transitivity
R Szklarczyk, J Heringa
Bioinformatics 20 (suppl_1), i311-i317, 2004
1452004
The ontogeny of a dominance hierarchy in colonies of the BumblebeeBombus terrestris (Hymenoptera, Apidae)
A Van Doorn, J Heringa
Insectes sociaux 33 (1), 3-25, 1986
1231986
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2010
1222010
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1182005
Side-chain clusters in protein structures and their role in protein folding
J Heringa, P Argos
Journal of molecular biology 220 (1), 151-171, 1991
1131991
SnapDRAGON: a method to delineate protein structural domains from sequence data
RA George, J Heringa
Journal of molecular biology 316 (3), 839-851, 2002
1122002
Three-dimensional domain duplication, swapping and stealing
J Heringa, WR Taylor
Current opinion in structural biology 7 (3), 416-421, 1997
1091997
A simple and fast approach to prediction of protein secondary structure from multiply aligned sequences with accuracy above 70%
PK Mehta, J Heringa, P Argos
Protein Science 4 (12), 2517-2525, 1995
1091995
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1082008
KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism
TJ Gibson, PM Rice, JD Thompson, J Heringa
Trends in biochemical sciences 18 (9), 331-333, 1993
941993
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