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Daniel Vera
Daniel Vera
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Jahr
Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
9382014
Reprogramming to recover youthful epigenetic information and restore vision
Y Lu, B Brommer, X Tian, A Krishnan, M Meer, C Wang, DL Vera, Q Zeng, ...
Nature 588 (7836), 124-129, 2020
5682020
Loss of epigenetic information as a cause of mammalian aging
JH Yang, M Hayano, PT Griffin, JA Amorim, MS Bonkowski, ...
Cell 186 (2), 305-326. e27, 2023
2802023
Open chromatin reveals the functional maize genome
E Rodgers-Melnick, DL Vera, HW Bass, ES Buckler
Proceedings of the National Academy of Sciences 113 (22), E3177-E3184, 2016
2482016
The maize W22 genome provides a foundation for functional genomics and transposon biology
NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ...
Nature genetics 50 (9), 1282-1288, 2018
1992018
Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
V Dileep, F Ay, J Sima, DL Vera, WS Noble, DM Gilbert
Genome research 25 (8), 1104-1113, 2015
1772015
Genome-wide analysis of replication timing by next-generation sequencing with E/L Repli-seq
C Marchal, T Sasaki, D Vera, K Wilson, J Sima, JC Rivera-Mulia, ...
Nature protocols 13 (5), 819-839, 2018
1532018
Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize
DL Vera, TF Madzima, JD Labonne, MP Alam, GG Hoffman, ...
The Plant Cell 26 (10), 3883-3893, 2014
872014
Allele-specific control of replication timing and genome organization during development
JC Rivera-Mulia, A Dimond, D Vera, C Trevilla-Garcia, T Sasaki, ...
Genome research 28 (6), 800-811, 2018
732018
Stability of wake-sleep cycles requires robust degradation of the PERIOD protein
M D’Alessandro, S Beesley, JK Kim, Z Jones, R Chen, J Wi, K Kyle, ...
Current Biology 27 (22), 3454-3467. e8, 2017
512017
The regulatory landscape of early maize inflorescence development
RK Parvathaneni, E Bertolini, M Shamimuzzaman, DL Vera, PY Lung, ...
Genome biology 21, 1-33, 2020
442020
DNA break-induced epigenetic drift as a cause of mammalian aging
M Hayano, JH Yang, MS Bonkowski, JA Amorim, JM Ross, G Coppotelli, ...
BioRxiv, 808659, 2019
412019
An hPSC-derived tissue-resident macrophage model reveals differential responses of macrophages to ZIKV and DENV infection
J Lang, Y Cheng, A Rolfe, C Hammack, D Vera, K Kyle, J Wang, ...
Stem cell reports 11 (2), 348-362, 2018
402018
Erosion of the epigenetic landscape and loss of cellular identity as a cause of aging in mammals
JH Yang, PT Griffin, DL Vera, JK Apostolides, M Hayano, MV Meer, ...
BioRxiv, 808642, 2019
392019
The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed
BS Sexton, D Avey, BR Druliner, JA Fincher, DL Vera, DJ Grau, ...
Genome research 24 (2), 251-259, 2014
392014
Stability of patient-specific features of altered DNA replication timing in xenografts of primary human acute lymphoblastic leukemia
T Sasaki, JC Rivera-Mulia, D Vera, J Zimmerman, S Das, M Padget, ...
Experimental hematology 51, 71-82. e3, 2017
372017
Modeling dengue virus-hepatic cell interactions using human pluripotent stem cell-derived hepatocyte-like cells
J Lang, D Vera, Y Cheng, H Tang
Stem cell reports 7 (3), 341-354, 2016
362016
Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales
JA Fincher, DL Vera, DD Hughes, KM McGinnis, JH Dennis, HW Bass
Plant physiology 162 (2), 1127-1141, 2013
302013
Multiple roles of H2A. Z in regulating promoter chromatin architecture in human cells
L Cole, S Kurscheid, M Nekrasov, R Domaschenz, DL Vera, JH Dennis, ...
Nature communications 12 (1), 2524, 2021
272021
Reversal of ageing-and injury-induced vision loss by Tet-dependent epigenetic reprogramming
Y Lu, A Krishnan, B Brommer, X Tian, M Meer, DL Vera, C Wang, Q Zeng, ...
BioRxiv, 710210, 2019
272019
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