Yih-Chii Hwang
Yih-Chii Hwang
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Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
Predicting essential genes based on network and sequence analysis
YC Hwang, CC Lin, JY Chang, H Mori, HF Juan, HC Huang
Molecular BioSystems 5 (12), 1672-1678, 2009
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements
YC Hwang, CF Lin, O Valladares, J Malamon, PP Kuksa, Q Zheng, ...
Bioinformatics 31 (8), 1290-1292, 2015
A functional genomics screen for microRNA regulators of NF-kappaB signaling
AO Olarerin-George, L Anton, YC Hwang, MA Elovitz, JB Hogenesch
BMC biology 11, 1-16, 2013
Essential Core of Protein−Protein Interaction Network in Escherichia coli
CC Lin, HF Juan, JT Hsiang, YC Hwang, H Mori, HC Huang
Journal of proteome research 8 (4), 1925-1931, 2009
High-throughput identification of long-range regulatory elements and their target promoters in the human genome
YC Hwang, Q Zheng, BD Gregory, LS Wang
Nucleic acids research 41 (9), 4835-4846, 2013
McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
D Hafez, A Karabacak, S Krueger, YC Hwang, LS Wang, RP Zinzen, ...
Genome biology 18, 1-21, 2017
Open-source mapping and variant calling for large-scale NGS data from original base-quality scores
O Krasheninina, YC Hwang, X Bai, A Zalcman, E Maxwell, JG Reid, ...
bioRxiv, 2020.12. 15.356360, 2020
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions
PP Kuksa, A Amlie-Wolf, YC Hwang, O Valladares, BD Gregory, LS Wang
NAR Genomics and Bioinformatics 2 (2), lqaa022, 2020
Analysis of nonlinear gene expression progression reveals extensive pathway and age-specific transitions in aging human brains
K Cao, P Ryvkin, YC Hwang, FB Johnson, LS Wang
Plos one 8 (10), e74578, 2013
DRAW+ SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments
CF Lin, O Valladares, DM Childress, E Klevak, ET Geller, YC Hwang, ...
Bioinformatics 29 (19), 2498-2500, 2013
Towards a comprehensive variation benchmark for challenging medically-relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Biorxiv, 2021
HiPPIE2: Identifying the Transcription Factors Mediating Enhancer-Target Gene Regulation in the Human Genome
YC Hwang, PP Kuksa, A Amlie-Wolf, BD Gregory, LS Wang
HUMAN HEREDITY 83 (1), 45-46, 2017
P1‐001: Prediction of late‐onset Alzheimer's disease‐associated enhancer elements
M Tang, C Kramer, G Xu, M Hawk, YC Hwang, CF Lin, P Kuksa, W Wang, ...
Alzheimer's & Dementia 11 (7S_Part_7), P336-P336, 2015
Identification of Long-Range Regulatory Elements in the Human Genome
YC Hwang
University of Pennsylvania, 2015
Topological characteristics of essential genes in the protein interaction network of essentiala coli bioinformatics
CC Lin, YC Hwang, HF Juan, H Mori, HC Huang
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