Chun Jimmie Ye
Chun Jimmie Ye
Other namesChun Ye, Jimmie Ye
Professor of Medicine, UCSF
Verified email at - Homepage
Cited by
Cited by
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature Biotechnology 23 (1), 137, 2005
Multiplexed droplet single-cell RNA-sequencing using natural genetic variation
HM Kang, M Subramaniam, S Targ, M Nguyen, L Maliskova, E McCarthy, ...
Nature Biotechnology 36 (1), 89, 2018
Generation of knock-in primary human T cells using Cas9 ribonucleoproteins
K Schumann, S Lin, E Boyer, DR Simeonov, M Subramaniam, RE Gate, ...
Proceedings of the National Academy of Sciences 112 (33), 10437-10442, 2015
CRISPR/Cas9-mediated PD-1 disruption enhances anti-tumor efficacy of human chimeric antigen receptor T cells
LJ Rupp, K Schumann, KT Roybal, RE Gate, CJ Ye, WA Lim, A Marson
Scientific Reports 7 (1), 737, 2017
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
ATL Lun, S Riesenfeld, T Andrews, T Gomes, JC Marioni
Genome Biology 20 (1), 63, 2019
Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes
T Raj, K Rothamel, S Mostafavi, C Ye, MN Lee, JM Replogle, T Feng, ...
Science 344 (6183), 519-523, 2014
A genome-wide CRISPR screen in primary immune cells to dissect regulatory networks
O Parnas, M Jovanovic, TM Eisenhaure, RH Herbst, A Dixit, CJ Ye, ...
Cell 162 (3), 675-686, 2015
Unleashing type-2 dendritic cells to drive protective antitumor CD4+ T cell immunity
M Binnewies, AM Mujal, JL Pollack, AJ Combes, EA Hardison, KC Barry, ...
Cell 177 (3), 556-571. e16, 2019
Intratumoral CD4+ T cells mediate anti-tumor cytotoxicity in human bladder cancer
DY Oh, SS Kwek, SS Raju, T Li, E McCarthy, E Chow, D Aran, A Ilano, ...
Cell 181 (7), 1612-1625. e13, 2020
Evaluation of SARS-CoV-2 serology assays reveals a range of test performance
JD Whitman, J Hiatt, CT Mowery, BR Shy, R Yu, TN Yamamoto, U Rathore, ...
Nature Biotechnology, 1-10, 2020
Common genetic variants modulate pathogen-sensing responses in human dendritic cells
MN Lee, C Ye, AC Villani, T Raj, W Li, TM Eisenhaure, SH Imboywa, ...
Science 343 (6175), 1246980, 2014
Single-cell RNA sequencing of lymph node stromal cells reveals niche-associated heterogeneity
LB Rodda, E Lu, ML Bennett, CL Sokol, X Wang, SA Luther, BA Barres, ...
Immunity 48 (5), 1014-1028. e6, 2018
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing
A Kirby, A Gnirke, DB Jaffe, V Barešová, N Pochet, B Blumenstiel, C Ye, ...
Nature Genetics 45 (3), 299, 2013
Discovery of stimulation-responsive immune enhancers with CRISPR activation
DR Simeonov, BG Gowen, M Boontanrart, TL Roth, JD Gagnon, ...
Nature 549 (7670), 111, 2017
Parsing the interferon transcriptional network and its disease associations
S Mostafavi, H Yoshida, D Moodley, H LeBoité, K Rothamel, T Raj, CJ Ye, ...
Cell 164 (3), 564-578, 2016
Transethnic genetic-correlation estimates from summary statistics
BC Brown, CJ Ye, AL Price, N Zaitlen
The American Journal of Human Genetics 99 (1), 76-88, 2016
Intersection of population variation and autoimmunity genetics in human T cell activation
CJ Ye, T Feng, HK Kwon, T Raj, MT Wilson, N Asinovski, C McCabe, ...
Science 345 (6202), 1254665, 2014
Global absence and targeting of protective immune states in severe COVID-19
AJ Combes, T Courau, NF Kuhn, KH Hu, A Ray, WS Chen, NW Chew, ...
Nature 591 (7848), 124-130, 2021
A tissue checkpoint regulates type 2 immunity
SJ Van Dyken, JC Nussbaum, J Lee, AB Molofsky, HE Liang, JL Pollack, ...
Nature Immunology 17 (12), 1381, 2016
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
S Yazar, J Alquicira-Hernandez, K Wing, A Senabouth, MG Gordon, ...
Science 376 (6589), eabf3041, 2022
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