| Biopython: freely available Python tools for computational molecular biology and bioinformatics PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ... Bioinformatics 25 (11), 1422, 2009 | 4044 | 2009 |
| Oncogenic pathway signatures in human cancers as a guide to targeted therapies AH Bild, G Yao, JT Chang, Q Wang, A Potti, D Chasse, MB Joshi, ... Nature 439 (7074), 353-357, 2006 | 2279 | 2006 |
| High-dimensional sparse factor modeling: Applications in gene expression genomics CM Carvalho, J Chang, JE Lucas, JR Nevins, Q Wang, M West Journal of the American Statistical Association 103 (484), 1438-1456, 2008 | 600 | 2008 |
| Integrating genotype and phenotype information: an overview of the PharmGKB project TE Klein, JT Chang, MK Cho, KL Easton, R Fergerson, M Hewett, Z Lin, ... The pharmacogenomics journal 1 (3), 167-170, 2001 | 480 | 2001 |
| High tumor mutation burden fails to predict immune checkpoint blockade response across all cancer types DJ McGrail, PG Pilié, NU Rashid, L Voorwerk, M Slagter, M Kok, ... Annals of Oncology 32 (5), 661-672, 2021 | 459 | 2021 |
| GATHER: a systems approach to interpreting genomic signatures JT Chang, JR Nevins Bioinformatics 22 (23), 2926-2933, 2006 | 396 | 2006 |
| Anchorage-independent cell growth signature identifies tumors with metastatic potential S Mori, JT Chang, ER Andrechek, N Matsumura, T Baba, G Yao, JW Kim, ... Oncogene 28 (31), 2796-2805, 2009 | 354 | 2009 |
| Creating an online dictionary of abbreviations from MEDLINE JT Chang, H Schütze, RB Altman Journal of the American Medical Informatics Association 9 (6), 612-620, 2002 | 292 | 2002 |
| FOXC2 Expression Links Epithelial–Mesenchymal Transition and Stem Cell Properties in Breast CancerFOXC2 in EMT and Cancer Stem Cells BG Hollier, AA Tinnirello, SJ Werden, KW Evans, JH Taube, TR Sarkar, ... Cancer research 73 (6), 1981-1992, 2013 | 291 | 2013 |
| Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature S Raychaudhuri, JT Chang, PD Sutphin, RB Altman Genome Research 12 (1), 203-214, 2002 | 279 | 2002 |
| Basic microarray analysis: grouping and feature reduction S Raychaudhuri, PD Sutphin, JT Chang, RB Altman TRENDS in Biotechnology 19 (5), 189-193, 2001 | 207 | 2001 |
| Functional genomics identifies five distinct molecular subtypes with clinical relevance and pathways for growth control in epithelial ovarian cancer TZ Tan, QH Miow, RYJ Huang, MK Wong, J Ye, JA Lau, MC Wu, ... EMBO molecular medicine 5 (7), 1051-1066, 2013 | 199 | 2013 |
| Biopython: Python tools for computational biology B Chapman, J Chang ACM Sigbio Newsletter 20 (2), 15-19, 2000 | 197 | 2000 |
| A dynamic bronchial airway gene expression signature of chronic obstructive pulmonary disease and lung function impairment K Steiling, M Van Den Berge, K Hijazi, R Florido, J Campbell, G Liu, ... American journal of respiratory and critical care medicine 187 (9), 933-942, 2013 | 169 | 2013 |
| Resistance to neoadjuvant chemotherapy in triple-negative breast cancer mediated by a reversible drug-tolerant state GV Echeverria, Z Ge, S Seth, X Zhang, S Jeter-Jones, X Zhou, S Cai, Y Tu, ... Science translational medicine 11 (488), eaav0936, 2019 | 168 | 2019 |
| Amplification and high-level expression of heat shock protein 90 marks aggressive phenotypes of human epidermal growth factor receptor 2 negative breast cancer Q Cheng, JT Chang, J Geradts, LM Neckers, T Haystead, NL Spector, ... Breast cancer research 14, 1-15, 2012 | 166 | 2012 |
| GAPSCORE: finding gene and protein names one word at a time JT Chang, H Schütze, RB Altman Bioinformatics 20 (2), 216-225, 2004 | 146 | 2004 |
| Dissecting the heterogeneity of skin gene expression patterns in systemic sclerosis S Assassi, WR Swindell, M Wu, FD Tan, D Khanna, DE Furst, DP Tashkin, ... Arthritis & rheumatology 67 (11), 3016-3026, 2015 | 141 | 2015 |
| Using a Stem Cell–Based Signature to Guide Therapeutic Selection in CancerStem Cell-Based Signature to Guide Therapeutic Selection I Shats, ML Gatza, JT Chang, S Mori, J Wang, J Rich, JR Nevins Cancer research 71 (5), 1772-1780, 2011 | 137 | 2011 |
| A genomic strategy to elucidate modules of oncogenic pathway signaling networks JT Chang, C Carvalho, S Mori, AH Bild, ML Gatza, Q Wang, JE Lucas, ... Molecular cell 34 (1), 104-114, 2009 | 136 | 2009 |
