Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex J Chen, B Malone, E Llewellyn, M Grasso, PMM Shelton, PDB Olinares, ... Cell 182 (6), 1560-1573. e13, 2020 | 404 | 2020 |
Structures and functions of coronavirus replication–transcription complexes and their relevance for SARS-CoV-2 drug design B Malone, N Urakova, EJ Snijder, EA Campbell Nature Reviews Molecular Cell Biology 23 (1), 21-39, 2022 | 332 | 2022 |
Learning optimal Bayesian networks: A shortest path perspective C Yuan, B Malone Journal of Artificial Intelligence Research 48, 23-65, 2013 | 195 | 2013 |
Learning optimal Bayesian networks using A* search C Yuan, B Malone, X Wu Twenty-second international joint conference on artificial intelligence, 2011 | 168 | 2011 |
Molnupiravir: coding for catastrophe B Malone, EA Campbell Nature Structural & Molecular Biology 28 (9), 706-708, 2021 | 165 | 2021 |
Empirical evaluation of scoring functions for Bayesian network model selection Z Liu, B Malone, C Yuan BMC bioinformatics 13 (Suppl 15), S14, 2012 | 130 | 2012 |
Time-resolved cryo-EM using Spotiton VP Dandey, WC Budell, H Wei, D Bobe, K Maruthi, M Kopylov, ET Eng, ... Nature methods 17 (9), 897-900, 2020 | 115 | 2020 |
m6A-mRNA methylation regulates cardiac gene expression and cellular growth V Kmietczyk, E Riechert, L Kalinski, E Boileau, E Malovrh, B Malone, ... Life science alliance 2 (2), 2019 | 112 | 2019 |
Polycomb Group Gene OsFIE2 Regulates Rice (Oryza sativa) Seed Development and Grain Filling via a Mechanism Distinct from Arabidopsis BRR Nallamilli, J Zhang, H Mujahid, BM Malone, SM Bridges, Z Peng PLoS genetics 9 (3), e1003322, 2013 | 99 | 2013 |
Structural basis for backtracking by the SARS-CoV-2 replication–transcription complex B Malone, J Chen, Q Wang, E Llewellyn, YJ Choi, PDB Olinares, X Cao, ... Proceedings of the National Academy of Sciences 118 (19), e2102516118, 2021 | 96 | 2021 |
Bayesian prediction of RNA translation from ribosome profiling B Malone, I Atanassov, F Aeschimann, X Li, H Großhans, C Dieterich Nucleic acids research 45 (6), 2960-2972, 2017 | 83 | 2017 |
Artificial intelligence predicts the immunogenic landscape of SARS-CoV-2 leading to universal blueprints for vaccine designs B Malone, B Simovski, C Moliné, J Cheng, M Gheorghe, H Fontenelle, ... Scientific reports 10 (1), 22375, 2020 | 71 | 2020 |
Learning optimal bounded treewidth Bayesian networks via maximum satisfiability J Berg, M Järvisalo, B Malone Artificial Intelligence and Statistics, 86-95, 2014 | 71 | 2014 |
Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data BM Malone, F Tan, SM Bridges, Z Peng PloS one 6 (9), e25260, 2011 | 71 | 2011 |
Tightening bounds for Bayesian network structure learning X Fan, C Yuan, B Malone Proceedings of the AAAI Conference on Artificial Intelligence 28 (1), 2014 | 57 | 2014 |
An improved admissible heuristic for learning optimal Bayesian networks C Yuan, B Malone arXiv preprint arXiv:1210.4913, 2012 | 57 | 2012 |
Improving the scalability of optimal Bayesian network learning with external-memory frontier breadth-first branch and bound search B Malone, C Yuan, EA Hansen, S Bridges arXiv preprint arXiv:1202.3744, 2012 | 56 | 2012 |
Memory-efficient dynamic programming for learning optimal Bayesian networks B Malone, C Yuan, E Hansen Proceedings of the AAAI Conference on Artificial Intelligence 25 (1), 1057-1062, 2011 | 54 | 2011 |
Finding Optimal Bayesian Network Structures with Constraints Learned from Data. X Fan, BM Malone, C Yuan UAI, 200-209, 2014 | 53 | 2014 |
Monitoring cell-type–specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress S Doroudgar, C Hofmann, E Boileau, B Malone, E Riechert, AA Gorska, ... Circulation research 125 (4), 431-448, 2019 | 52 | 2019 |