Martin Krallinger

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Lynette HirschmanThe MITRE CorporationVerified email at mitre.org
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Antonio Miranda-EscaladaReserch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Marta VillegasBarcelona Supercomputing CenterVerified email at bsc.es
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Cathy WuUniversity of DelawareVerified email at udel.edu
Cecilia ArighiUniversity of DelawareVerified email at udel.edu
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Salvador Lima LópezResearch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Martín Perez PerezCINBIO, Universidade de Vigo, Department of Computer Science, ESEI – Escuela Superior de IngenieríaVerified email at esei.uvigo.es
Jose A Lopez-MartinGÉTICA | PharmaMarVerified email at systemsmed.net
Montserrat MarimonUniversitat Pompeu FabraVerified email at upf.edu
Anastasios NentidisNCSR "Demokritos", Greece & Aristotle University of Thessaloniki, GreeceVerified email at iit.demokritos.gr
Georgios PaliourasNational Center for Scientific Research "Demokritos", Athens, GreeceVerified email at iit.demokritos.gr

Martin Krallinger

*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)

Verified email at bsc.es - Homepage

Biomedicine NLP text mining bioinformatics AI


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Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9, 1-19, 2008	331	2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9 (2), 1-14, 2008	268	2008
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6 (7), 1-8, 2005	257	2005
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	245	2015
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9 (2), 1-9, 2008	229	2008
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	225	2017
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015	218	2015
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	208	2005
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017	199	2017
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	187	2013
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6, 1-13, 2005	182	2005
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	179	2012
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011	179	2011
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	135	2010
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008	127	2008
Overview of the CLEF eHealth evaluation lab 2020 L Goeuriot, H Suominen, L Kelly, A Miranda-Escalada, M Krallinger, Z Liu, ... Experimental IR Meets Multilinguality, Multimodality, and Interaction: 11th …, 2020	125	2020
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12, 1-9, 2011	124	2011
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	118	2005
Analysis of biological processes and diseases using text mining approaches M Krallinger, F Leitner, A Valencia Bioinformatics Methods in Clinical Research, 341-382, 2010	105	2010
Text mining for drugs and chemical compounds: methods, tools and applications M Vazquez, M Krallinger, F Leitner, A Valencia Molecular Informatics 30 (6‐7), 506-519, 2011	99	2011

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