| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1501 | 2005 |
| A promoter-level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014 | 933 | 2014 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 252 | 2018 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic acids research 41 (D1), D195-D202, 2013 | 223 | 2013 |
| An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Ĺström, ... Nature biotechnology 35 (9), 872-878, 2017 | 221 | 2017 |
| Homotypic regulatory clusters in Drosophila AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko Genome research 13 (4), 579-588, 2003 | 185 | 2003 |
| Identification of proteins associated with murine cytomegalovirus virions LM Kattenhorn, R Mills, M Wagner, A Lomsadze, V Makeev, ... Journal of virology 78 (20), 11187-11197, 2004 | 179 | 2004 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 174 | 2016 |
| Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010 | 154 | 2010 |
| A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005 | 147 | 2005 |
| De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum) MD Logacheva, AS Kasianov, DV Vinogradov, TH Samigullin, ... BMC genomics 12 (1), 30, 2011 | 146 | 2011 |
| Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS Comput Biol 8 (5), e1002529, 2012 | 130 | 2012 |
| Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information VJ Makeev, AP Lifanov, AG Nazina, DA Papatsenko Nucleic acids research 31 (20), 6016-6026, 2003 | 108 | 2003 |
| Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression V Boeva, M Regnier, D Papatsenko, V Makeev Bioinformatics 22 (6), 676-684, 2006 | 105 | 2006 |
| Extraction of functional binding sites from unique regulatory regions: the Drosophila early developmental enhancers DA Papatsenko, VJ Makeev, AP Lifanov, M Régnier, AG Nazina, ... Genome research 12 (3), 470-481, 2002 | 105 | 2002 |
| A novel model system for design of biomaterials based on recombinant analogs of spider silk proteins VG Bogush, OS Sokolova, LI Davydova, DV Klinov, KV Sidoruk, ... Journal of neuroimmune pharmacology 4 (1), 17, 2009 | 100 | 2009 |
| Intergenic, gene terminal, and intragenic CpG islands in the human genome YA Medvedeva, MV Fridman, NJ Oparina, DB Malko, EO Ermakova, ... BMC genomics 11 (1), 48, 2010 | 88 | 2010 |
| From binding motifs in ChIP-seq data to improved models of transcription factor binding sites I Kulakovskiy, V Levitsky, D Oshchepkov, L Bryzgalov, I Vorontsov, ... Journal of bioinformatics and computational biology 11 (01), 2013 | 60 | 2013 |
| The complete genome sequence of Pantoea ananatis AJ13355, an organism with great biotechnological potential Y Hara, N Kadotani, H Izui, JI Katashkina, TM Kuvaeva, IG Andreeva, ... Applied microbiology and biotechnology 93 (1), 331-341, 2012 | 51 | 2012 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 1-11, 2013 | 49 | 2013 |
Ivan KulakovskiyInstitute of Protein Research RASVerified email at vigg.ru
