| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 14255 | 2019 |
| Gut Microbial Diversity in Women with Polycystic Ovary Syndrome Correlates with Hyperandrogenism PJ Torres, M Siakowska, B Banaszewska, L Pawelczyk, AJ Duleba, ... The Journal of Clinical Endocrinology & Metabolism, 2018 | 294 | 2018 |
| Global phylogeography and ancient evolution of the widespread human gut virus crAssphage RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ... Nature microbiology 4 (10), 1727-1736, 2019 | 217 | 2019 |
| Characterization of the salivary microbiome in patients with pancreatic cancer PJ Torres, EM Fletcher, SM Gibbons, M Bouvet, KS Doran, ST Kelley PeerJ 3, e1373, 2015 | 195 | 2015 |
| Exposure to a healthy gut microbiome protects against reproductive and metabolic dysregulation in a PCOS mouse model PJ Torres, BS Ho, P Arroyo, L Sau, A Chen, ST Kelley, VG Thackray Endocrinology 160 (5), 1193-1204, 2019 | 91 | 2019 |
| Effects of moderate, voluntary ethanol consumption on the rat and human gut microbiome KL Kosnicki, JC Penprase, P Cintora, PJ Torres, GL Harris, SM Brasser, ... Addiction biology 24 (4), 617-630, 2019 | 59 | 2019 |
| Endosymbiont interference and microbial diversity of the Pacific coast tick, Dermacentor occidentalis, in San Diego County, California N Gurfield, S Grewal, LS Cua, PJ Torres, ST Kelley PeerJ 5, e3202, 2017 | 58 | 2017 |
| Letrozole treatment of adult female mice results in a similar reproductive phenotype but distinct changes in metabolism and the gut microbiome compared to pubertal mice PJ Torres, DV Skarra, BS Ho, L Sau, AR Anvar, ST Kelley, VG Thackray BMC microbiology 19, 1-15, 2019 | 48 | 2019 |
| Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center AJ Prussin, PJ Torres, J Shimashita, SR Head, KJ Bibby, ST Kelley, ... Microbiome 7, 1-14, 2019 | 37 | 2019 |
| Discovery of a novel periodontal disease-associated bacterium PJ Torres, J Thompson, JS McLean, ST Kelley, A Edlund Microbial ecology 77, 267-276, 2019 | 36 | 2019 |
| The salivary metatranscriptome as an accurate diagnostic indicator of oral cancer B Guruduth, O Oyetunji, R Toma, R Sathyapriya, YK Lim, K Tang, ... NPJ Genomic Medicine 6 (1), 2021 | 29* | 2021 |
| PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive PJ Torres, RA Edwards, K McNair Bioinformatics, 2017 | 29 | 2017 |
| A clinically validated human capillary blood transcriptome test for global systems biology studies R Toma, N Duval, B Pelle, MM Parks, V Gopu, PJ Torres, FR Camacho, ... BioTechniques 69 (4), 289-301, 2020 | 18 | 2020 |
| Gut metabolites are more predictive of disease and cohoused states than gut bacterial features in a polycystic ovary syndrome-like mouse model B Ho, D Ryback, B Benson, CN Mason, PJ Torres, RA Quinn, ... Msystems 6 (5), 10.1128/msystems. 01149-20, 2021 | 9 | 2021 |
| An accurate aging clock developed from the largest dataset of microbial and human gene expression reveals molecular mechanisms of aging V Gopu, Y Cai, S Krishnan, S Rajagopal, FR Camacho, R Toma, ... BioRxiv, 2020.09. 17.301887, 2020 | 8 | 2020 |
| Detecting salivary host and microbiome RNA signature for aiding diagnosis of oral and throat cancer G Banavar, O Ogundijo, C Julian, R Toma, F Camacho, PJ Torres, L Hu, ... Oral Oncology 145, 106480, 2023 | 6 | 2023 |
| Gut microbiome activity predicts risk of type 2 diabetes and metformin control in a large human cohort N Shen, N Dimitrova, CH Ho, PJ Torres, FR Camacho, Y Cai, M Vuyisich, ... medRxiv, 2021.08. 13.21262051, 2021 | 6 | 2021 |
| Sampling, extraction, and high-throughput sequencing methods for environmental microbial and viral communities PJ Torres, ST Kelley Next Generation Sequencing: Methods and Protocols, 163-173, 2018 | 6 | 2018 |
| A clinically validated human saliva metatranscriptomic test for global systems biology studies R Toma, Y Cai, O Ogundijo, L Hu, S Gline, D Demusaj, N Duval, P Torres, ... Biotechniques 74 (1), 31-44, 2023 | 4 | 2023 |
| Al ghalith E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet GA, 0 | 2 | |
Scott T. KelleyProfessor of Biology, San Diego State UniversityVerified email at mail.sdsu.edu
