Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6105 | 2007 |
The primary transcriptome of the major human pathogen Helicobacter pylori CM Sharma, S Hoffmann, F Darfeuille, J Reignier, S Findeiß, A Sittka, ... Nature 464 (7286), 250-255, 2010 | 1333 | 2010 |
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS computational biology 3 (4), e65, 2007 | 605 | 2007 |
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7, 1-15, 2006 | 385 | 2006 |
MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma K Boll, K Reiche, K Kasack, N Mörbt, AK Kretzschmar, JM Tomm, ... Oncogene 32 (3), 277-285, 2013 | 252 | 2013 |
Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007 | 226 | 2007 |
Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci H Kirsten, H Al-Hasani, L Holdt, A Gross, F Beutner, K Krohn, K Horn, ... Human molecular genetics 24 (16), 4746-4763, 2015 | 117 | 2015 |
Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved A Nitsche, D Rose, M Fasold, K Reiche, PF Stadler Rna 21 (5), 801-812, 2015 | 108 | 2015 |
Evolutionary patterns of non-coding RNAs AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ... Theory in Biosciences 123 (4), 301-369, 2005 | 97 | 2005 |
RNAs everywhere: Genome‐wide annotation of structured RNAs R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007 | 93 | 2007 |
Structural profiles of human miRNA families from pairwise clustering B Kaczkowski, E Torarinsson, K Reiche, JH Havgaard, PF Stadler, ... Bioinformatics 25 (3), 291-294, 2009 | 77 | 2009 |
Roquin targets mRNAs in a 3'-UTR-specific manner by different modes of regulation HV Essig K, Kronbeck N, Guimaraes JC, Lohs C, Schlundt A, Hoffmann A ... Nature Communications, 2018 | 66 | 2018 |
Non-coding RNAs in Ciona intestinalis K Missal, D Rose, PF Stadler Bioinformatics 21 (suppl_2), ii77-ii78, 2005 | 62 | 2005 |
Computational RNomics of drosophilids D Rose, J Hackermüller, S Washietl, K Reiche, J Hertel, S Findeiß, ... BMC genomics 8, 1-14, 2007 | 61 | 2007 |
Prediction of structured non‐coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae K Missal, X Zhu, D Rose, W Deng, G Skogerbø, R Chen, PF Stadler Journal of Experimental Zoology Part B: Molecular and Developmental …, 2006 | 61 | 2006 |
Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs J Hackermüller, K Reiche, C Otto, N Hösler, C Blumert, K Brocke-Heidrich, ... Genome biology 15, 1-23, 2014 | 54 | 2014 |
The transcriptome of the zebrafish embryo after chemical exposure: a meta-analysis A Schüttler, K Reiche, R Altenburger, W Busch Toxicological Sciences 157 (2), 291-304, 2017 | 47 | 2017 |
Long non-coding RNAs differentially expressed between normal versus primary breast tumor tissues disclose converse changes to breast cancer-related protein-coding genes K Reiche, K Kasack, S Schreiber, T Lüders, EU Due, B Naume, M Riis, ... PloS one 9 (9), e106076, 2014 | 46 | 2014 |
Time to evolve: predicting engineered T cell-associated toxicity with next-generation models E Donnadieu, M Luu, M Alb, B Anliker, S Arcangeli, C Bonini, ... Journal for immunotherapy of cancer 10 (5), 2022 | 39 | 2022 |
RNAstrand: reading direction of structured RNAs in multiple sequence alignments K Reiche, PF Stadler Algorithms for Molecular Biology 2, 1-10, 2007 | 38 | 2007 |