| Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin S Ma, B Zhang, LM LaFave, AS Earl, Z Chiang, Y Hu, J Ding, A Brack, ... Cell 183 (4), 1103-1116. e20, 2020 | 641 | 2020 |
| Lineage tracing in humans enabled by mitochondrial mutations and single-cell genomics LS Ludwig, CA Lareau, JC Ulirsch, E Christian, C Muus, LH Li, K Pelka, ... Cell 176 (6), 1325-1339. e22, 2019 | 404 | 2019 |
| Induction and transcriptional regulation of the co-inhibitory gene module in T cells N Chihara, A Madi, T Kondo, H Zhang, N Acharya, M Singer, J Nyman, ... Nature 558 (7710), 454-459, 2018 | 383 | 2018 |
| A large peptidome dataset improves HLA class I epitope prediction across most of the human population S Sarkizova, S Klaeger, PM Le, LW Li, G Oliveira, H Keshishian, ... Nature biotechnology 38 (2), 199-209, 2020 | 381 | 2020 |
| CAR T cell killing requires the IFNγR pathway in solid but not liquid tumours RC Larson, MC Kann, SR Bailey, NJ Haradhvala, PM Llopis, AA Bouffard, ... Nature 604 (7906), 563-570, 2022 | 186 | 2022 |
| Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer T Ouspenskaia, T Law, KR Clauser, S Klaeger, S Sarkizova, F Aguet, B Li, ... Nature biotechnology 40 (2), 209-217, 2022 | 182 | 2022 |
| Epigenomic state transitions characterize tumor progression in mouse lung adenocarcinoma LM LaFave, VK Kartha, S Ma, K Meli, I Del Priore, C Lareau, S Naranjo, ... Cancer Cell 38 (2), 212-228. e13, 2020 | 169 | 2020 |
| Single-Cell Deconvolution of Head and Neck Squamous Cell Carcinoma Z Qi, Y Liu, M Mints, R Mullins, R Sample, T Law, T Barrett, AL Mazul, ... Cancers 13 (6), 1230, 2021 | 31 | 2021 |
| Methods for identifying neoantigens T Ouspenskaia, T Law, A Regev, S Carr, K Clauser, S Klaeger, ... US Patent App. 17/414,480, 2022 | 1 | 2022 |
| Neoantigens from translated unannotated open reading frames in cancer T Ouspenskaia, TE Law, KR Clauser, S Klaeger, DB Keskin, B Li, ... Cancer Research 79 (13_Supplement), 566-566, 2019 | 1 | 2019 |
| 221 CRISPR screen identifies loss of IFNγR signaling and downstream adhesion as a resistance mechanism to CAR T-cell cytotoxicity in solid but not liquid tumors R Larson, M Kann, S Bailey, N Haradhvala, K Stewart, A Bouffard, I Scarfo, ... Journal for ImmunoTherapy of Cancer 9 (Suppl 2), 2021 | | 2021 |
| Leveraging single-cell epigenomics to uncover regulatory programs in lung adenocarcinoma. LM LaFave, V Kartha, S Ma, K Meli, I Del Priore, C Lareau, V Sanker, ... CANCER RESEARCH 80 (11), 27-28, 2020 | | 2020 |
| Abstract PR08: Leveraging single-cell epigenomics to uncover regulatory programs in lung adenocarcinoma LM LaFave, V Kartha, S Ma, K Meli, ID Priore, C Lareau, V Sanker, ... Cancer Research 80 (11_Supplement), PR08-PR08, 2020 | | 2020 |
| Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer T Ouspenskaia, T Law, KR Clauser, S Klaeger, S Sarkizova, F Aguet, B Li, ... Biorxiv, 2020 | | 2020 |
| Improved HLA peptide sequencing accuracy and sensitivity via optimized scoring of database search results and de novo interpretations KR Clauser, SE Klaeger, T Ouspenskaia, T Law, DB Keskin, S Sarkizova, ... MOLECULAR & CELLULAR PROTEOMICS 18 (8), S71-S71, 2019 | | 2019 |
| Ribosome profiling predicts novel unannotated open reading frames that contribute peptides to the MHC class I immunopeptidome T Ouspenskaia, TE Law, KR Clauser, S Klaeger, DB Keskin, B Li, ... MOLECULAR & CELLULAR PROTEOMICS 18 (8), S32-S32, 2019 | | 2019 |
