MARVEL, a tool for prediction of bacteriophage sequences in metagenomic bins D Amgarten, LPP Braga, AM Da Silva, JC Setubal Frontiers in genetics 9, 397865, 2018 | 153 | 2018 |
SARS-CoV-2 isolation from the first reported patients in Brazil and establishment of a coordinated task network DB Araujo, RRG Machado, DE Amgarten, FM Malta, GG de Araujo, ... Memórias do Instituto Oswaldo Cruz 115, 2020 | 113 | 2020 |
Bacterial diversification in the light of the interactions with phages: the genetic symbionts and their role in ecological speciation LPP Braga, SM Soucy, DE Amgarten, AM Da Silva, JC Setubal Frontiers in Ecology and Evolution 6, 6, 2018 | 40 | 2018 |
Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages D Amgarten, LF Martins, KC Lombardi, LP Antunes, APS de Souza, ... BMC genomics 18, 1-18, 2017 | 29 | 2017 |
Effectiveness of heterologous coronavirus disease 2019 (COVID-19) vaccine booster dosing in Brazilian healthcare workers, 2021 AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Clinical infectious diseases 76 (3), e360-e366, 2023 | 26 | 2023 |
Sabiá Virus–Like Mammarenavirus in Patient with Fatal Hemorrhagic Fever, Brazil, 2020 F de Mello Malta, D Amgarten, ACSS Nastri, YL Ho, LVB Casadio, ... Emerging infectious diseases 26 (6), 1332, 2020 | 22 | 2020 |
Risk factors for long coronavirus disease 2019 (long COVID) among healthcare personnel, Brazil, 2020–2022 AR Marra, VS Sampaio, MC Ozahata, R Lopes, AF Brito, M Bragatte, ... Infection Control & Hospital Epidemiology 44 (12), 1972-1978, 2023 | 15 | 2023 |
Mass molecular testing for COVID19 using NGS-based technology and a highly scalable workflow F de Mello Malta, D Amgarten, FC Val, MC Cervato, BMC de Azevedo, ... Scientific reports 11 (1), 7122, 2021 | 15 | 2021 |
vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and deep neural networks D Amgarten, BKV Iha, CM Piroupo, AM Da Silva, JC Setubal bioRxiv, 2020.12. 06.413476, 2020 | 14 | 2020 |
vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and neural networks D Amgarten, BKV Iha, CM Piroupo, AM da Silva, JC Setubal PHAGE 3 (4), 204-212, 2022 | 8 | 2022 |
Novel virocell metabolic potential revealed in agricultural soils by virus‐enriched soil metagenome analysis LPP Braga, FH Coutinho, DE Amgarten, W Kot, L Hansen, JC Setubal, ... Environmental microbiology reports 13 (3), 348-354, 2021 | 8 | 2021 |
Malta FdM, de Araujo GG, Monteiro CO, Candido ED, Soares CP, de Menezes FG, Pires ACC, et al. SARS-CoV-2 isolation from the first reported patients in Brazil and establishment … DB Araujo, RRG Machado, DE Amgarten Mem. Inst. Oswaldo Cruz 115, e200342, 2020 | 8 | 2020 |
Effectiveness of two COVID-19 vaccines (viral vector and inactivated viral vaccine) against SARS-CoV-2 infection in a cohort of healthcare workers. AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Infect Control Hosp Epidemiol, 1-20, 2022 | 7 | 2022 |
First report and genetic characterization of the highly pathogenic avian influenza A (H5N1) virus in Cabot's tern (Thalasseus acuflavidus), Brazil D Reischak, AV Rivetti Jr, JNP Otaka, CS Domingues, T de Lima Freitas, ... Veterinary and Animal Science 22, 100319, 2023 | 5 | 2023 |
Detection of Hepatitis E Virus Genotype 3 in Feces of Capybaras (Hydrochoeris hydrochaeris) in Brazil L Cunha, A Luchs, LS Azevedo, VCM Silva, MF Lemos, AC Costa, ... Viruses 15 (2), 335, 2023 | 5 | 2023 |
Effectiveness of two coronavirus disease 2019 (COVID-19) vaccines (viral vector and inactivated viral vaccine) against severe acute respiratory coronavirus virus 2 (SARS-CoV-2 … AR Marra, JL Miraglia, DT Malheiros, Y Guozhang, VD Teich, ... Infection Control & Hospital Epidemiology 44 (1), 75-81, 2023 | 4 | 2023 |
MARVEL, a tool for prediction of bacteriophage sequences in metagenomic bins. Front Genet. 2018; 9: 304 D Amgarten, LPP Braga, AM da Silva, JC Setubal | 4 | 2018 |
Risk factors for long COVID among healthcare workers, Brazil, 2020–2022 AR Marra, VS Sampaio, MC Ozahata, RLP da Silva, A Brito, M Bragatte, ... medRxiv, 2023.01. 03.22284043, 2023 | 3 | 2023 |
Nucleocapsid single point-mutation associated with drop-out on RT-PCR assay for SARS-CoV-2 detection F de Mello Malta, D Amgarten, AR Marra, RC Petroni, LH da Silva Nali, ... BMC Infectious Diseases 23 (1), 714, 2023 | 2 | 2023 |
Mortality in Sea Lions is associated with the introduction of the H5N1 clade 2.3. 4.4 b virus in Brazil, October 2023: Whole genome sequencing and phylogenetic analysis AC Araújo, AY Cho, LMN Silva, TC Corrêa, GC Souza, AS Albuquerque, ... | 1 | 2023 |