Thomas Rattei
Thomas Rattei
Professor for Computational Biology, University of Vienna
Bestätigte E-Mail-Adresse bei univie.ac.at
TitelZitiert vonJahr
Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
13752010
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790, 2006
9352006
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2015
7142015
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504, 2015
6952015
The dynamic genome of Hydra
JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ...
Nature 464 (7288), 592, 2010
6232010
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
A Spang, R Hatzenpichler, C Brochier-Armanet, T Rattei, P Tischler, ...
Trends in microbiology 18 (8), 331-340, 2010
4652010
Illuminating the evolutionary history of chlamydiae
M Horn, A Collingro, S Schmitz-Esser, CL Beier, U Purkhold, B Fartmann, ...
Science 304 (5671), 728-730, 2004
4462004
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2011
4322011
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
J Krumsiek, R Arnold, T Rattei
Bioinformatics 23 (8), 1026-1028, 2007
4322007
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
S Lücker, M Wagner, F Maixner, E Pelletier, H Koch, B Vacherie, T Rattei, ...
Proceedings of the National Academy of Sciences 107 (30), 13479-13484, 2010
4142010
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
NS Webster, MW Taylor, F Behnam, S Lücker, T Rattei, S Whalan, M Horn, ...
Environmental Microbiology 12 (8), 2070-2082, 2010
3772010
amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
M Pester, T Rattei, S Flechl, A Gröngröft, A Richter, J Overmann, ...
Environmental Microbiology 14 (2), 525-539, 2012
3762012
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
3422014
MIPS: analysis and annotation of proteins from whole genomes in 2005
HW Mewes, D Frishman, KFX Mayer, M Münsterkötter, O Noubibou, ...
Nucleic acids research 34 (suppl_1), D169-D172, 2006
3332006
Sequence-based prediction of type III secreted proteins
R Arnold, S Brandmaier, F Kleine, P Tischler, E Heinz, S Behrens, ...
PLoS pathogens 5 (4), e1000376, 2009
2482009
The genome of the ammonia‐oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
A Spang, A Poehlein, P Offre, S Zumbrägel, S Haider, N Rychlik, B Nowka, ...
Environmental microbiology 14 (12), 3122-3145, 2012
2032012
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725, 2017
2012017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063, 2017
1972017
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ...
Genome biology 14 (2), R11, 2013
1882013
probeCheck–a central resource for evaluating oligonucleotide probe coverage and specificity
A Loy, R Arnold, P Tischler, T Rattei, M Wagner, M Horn
Environmental microbiology 10 (10), 2894-2898, 2008
1882008
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