Thomas Rattei
Thomas Rattei
Professor for Computational Biology, University of Vienna
Verified email at univie.ac.at
Title
Cited by
Cited by
Year
Genome sequencing and analysis of the model grass Brachypodium distachyon
International Brachypodium Initiative
Nature 463 (7282), 763, 2010
14032010
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
M Strous, E Pelletier, S Mangenot, T Rattei, A Lehner, MW Taylor, M Horn, ...
Nature 440 (7085), 790-794, 2006
9802006
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic acids research 44 (D1), D286-D293, 2016
8902016
Complete nitrification by Nitrospira bacteria
H Daims, EV Lebedeva, P Pjevac, P Han, C Herbold, M Albertsen, ...
Nature 528 (7583), 504, 2015
8132015
The dynamic genome of Hydra
JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ...
Nature 464 (7288), 592-596, 2010
6352010
Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
A Spang, R Hatzenpichler, C Brochier-Armanet, T Rattei, P Tischler, ...
Trends in microbiology 18 (8), 331-340, 2010
4792010
Gepard: a rapid and sensitive tool for creating dotplots on genome scale
J Krumsiek, R Arnold, T Rattei
Bioinformatics 23 (8), 1026-1028, 2007
4752007
Illuminating the evolutionary history of chlamydiae
M Horn, A Collingro, S Schmitz-Esser, CL Beier, U Purkhold, B Fartmann, ...
Science 304 (5671), 728-730, 2004
4582004
eggNOG v3. 0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges
S Powell, D Szklarczyk, K Trachana, A Roth, M Kuhn, J Muller, R Arnold, ...
Nucleic acids research 40 (D1), D284-D289, 2012
4462012
amoA‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
M Pester, T Rattei, S Flechl, A Gröngröft, A Richter, J Overmann, ...
Environmental Microbiology 14 (2), 525-539, 2012
3942012
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
NS Webster, MW Taylor, F Behnam, S Lücker, T Rattei, S Whalan, M Horn, ...
Environmental Microbiology 12 (8), 2070-2082, 2010
3842010
eggNOG v4. 0: nested orthology inference across 3686 organisms
S Powell, K Forslund, D Szklarczyk, K Trachana, A Roth, J Huerta-Cepas, ...
Nucleic acids research 42 (D1), D231-D239, 2014
3672014
A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
S Lücker, M Wagner, F Maixner, E Pelletier, H Koch, B Vacherie, T Rattei, ...
Proceedings of the National Academy of Sciences 107 (30), 13479-13484, 2010
3632010
MIPS: analysis and annotation of proteins from whole genomes in 2005
HW Mewes, D Frishman, KFX Mayer, M Münsterkötter, O Noubibou, ...
Nucleic acids research 34 (suppl_1), D169-D172, 2006
3412006
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
2742017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2542017
Sequence-based prediction of type III secreted proteins
R Arnold, S Brandmaier, F Kleine, P Tischler, E Heinz, S Behrens, ...
PLoS pathogens 5 (4), 2009
2542009
The genome of the ammonia‐oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
A Spang, A Poehlein, P Offre, S Zumbrägel, S Haider, N Rychlik, B Nowka, ...
Environmental microbiology 14 (12), 3122-3145, 2012
2082012
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy, N Zafar, C Bertelli, ...
Genome biology 14 (2), R11, 2013
2062013
probeCheck–a central resource for evaluating oligonucleotide probe coverage and specificity
A Loy, R Arnold, P Tischler, T Rattei, M Wagner, M Horn
Environmental microbiology 10 (10), 2894-2898, 2008
1982008
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