MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies DD Kang, F Li, E Kirton, A Thomas, R Egan, H An, Z Wang PeerJ 7, e7359, 2019 | 3552* | 2019 |
Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 736 | 2017 |
Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome W Shi, CD Moon, SC Leahy, D Kang, J Froula, S Kittelmann, C Fan, ... Genome research 24 (9), 1517-1525, 2014 | 368 | 2014 |
Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing SP Gordon, E Tseng, A Salamov, J Zhang, X Meng, Z Zhao, D Kang, ... PloS one 10 (7), e0132628, 2015 | 349 | 2015 |
The epigenomic landscape of prokaryotes MJ Blow, TA Clark, CG Daum, AM Deutschbauer, A Fomenkov, R Fries, ... PLoS genetics 12 (2), e1005854, 2016 | 333 | 2016 |
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations ML Bendall, SLR Stevens, LK Chan, S Malfatti, P Schwientek, J Tremblay, ... The ISME journal 10 (7), 1589-1601, 2016 | 233 | 2016 |
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection X Wang, DD Kang, K Shen, C Song, S Lu, LC Chang, SG Liao, Z Huo, ... Bioinformatics 28 (19), 2534-2536, 2012 | 209 | 2012 |
Profiling early lung immune responses in the mouse model of tuberculosis DD Kang, Y Lin, JR Moreno, TD Randall, SA Khader PloS one 6 (1), e16161, 2011 | 162 | 2011 |
Missing value imputation in high-dimensional phenomic data: imputable or not, and how? SG Liao, Y Lin, DD Kang, D Chandra, J Bon, N Kaminski, FC Sciurba, ... BMC bioinformatics 15, 1-12, 2014 | 147 | 2014 |
Helminth-induced arginase-1 exacerbates lung inflammation and disease severity in tuberculosis L Monin, KL Griffiths, WY Lam, R Gopal, DD Kang, M Ahmed, ... The Journal of clinical investigation 125 (12), 4699-4713, 2015 | 109 | 2015 |
MetaQC: objective quality control and inclusion/exclusion criteria for genomic meta-analysis DD Kang, E Sibille, N Kaminski, GC Tseng Nucleic Acids Research 40 (2), e15-e15, 2012 | 97 | 2012 |
Integrative phenotyping framework (iPF): integrative clustering of multiple omics data identifies novel lung disease subphenotypes SH Kim, JD Herazo-Maya, DD Kang, BM Juan-Guardela, J Tedrow, ... BMC genomics 16, 1-11, 2015 | 93 | 2015 |
Toll‐like receptor 8 agonist GS‐9688 induces sustained efficacy in the woodchuck model of chronic hepatitis B S Daffis, S Balsitis, J Chamberlain, J Zheng, R Santos, W Rowe, ... Hepatology 73 (1), 53-67, 2021 | 73 | 2021 |
Biological impact of missing-value imputation on downstream analyses of gene expression profiles S Oh, DD Kang, GN Brock, GC Tseng Bioinformatics 27 (1), 78-86, 2011 | 62 | 2011 |
Meta-analytic principal component analysis in integrative omics application SH Kim, D Kang, Z Huo, Y Park, GC Tseng Bioinformatics 34 (8), 1321-1328, 2018 | 51 | 2018 |
PIWI proteins are dispensable for mouse somatic development and reprogramming of fibroblasts into pluripotent stem cells EC Cheng, D Kang, Z Wang, H Lin PloS one 9 (9), e97821, 2014 | 31 | 2014 |
Reconstructing single genomes from complex microbial communities DD Kang, EM Rubin, Z Wang it-Information Technology 58 (3), 133-139, 2016 | 10 | 2016 |
Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing SP Gordon, E Tseng, A Salamov, J Zhang, X Meng, Z Zhao, D Kang, ... bioRxiv, 012542, 2014 | 8 | 2014 |
A new method for rapid genome classification, clustering, visualization, and novel taxa discovery from metagenome Z Wang, H Ho, R Egan, S Yao, D Kang, J Froula, V Sevim, F Schulz, ... bioRxiv, 812917, 2019 | 5 | 2019 |
Critical Assessment of Metagenome Interpretation− a benchmark of computational metagenomics software. bioRxiv 099127 A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Droege, ... | 5 | 2017 |