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Pedro Rafael Magalhães
Pedro Rafael Magalhães
Chemistry and Biochemistry Center, Faculty of Science, University of Lisbon, BioISI
Verified email at fc.ul.pt
Title
Cited by
Cited by
Year
Constant-pH molecular dynamics study of kyotorphin in an explicit bilayer
PR Magalhaes, M Machuqueiro, AM Baptista
Biophysical journal 108 (9), 2282-2290, 2015
202015
Effect of a pH Gradient on the Protonation States of Cytochrome c Oxidase: A Continuum Electrostatics Study
PR Magalhães, ASF Oliveira, SRR Campos, CM Soares, AM Baptista
Journal of chemical information and modeling 57 (2), 256-266, 2017
102017
The anti-inflammatory action of the analgesic kyotorphin neuropeptide derivatives: insights of a lipid-mediated mechanism
K Conceição, PR Magalhães, SRR Campos, MM Domingues, VG Ramu, ...
Amino acids 48, 307-318, 2016
92016
Optimization of an in Silico Protocol Using Probe Permeabilities to Identify Membrane Pan-Assay Interference Compounds
PR Magalhães, PBPS Reis, D Vila-Viçosa, M Machuqueiro, BL Victor
Journal of Chemical Information and Modeling 62 (12), 3034-3042, 2022
82022
Identification of Pan-Assay INterference compoundS (PAINS) Using an MD-Based Protocol
PR Magalhães, PBPS Reis, D Vila-Viçosa, M Machuqueiro, BL Victor
Computational Design of Membrane Proteins, 263-271, 2021
82021
New (Iso) quinolinyl-pyridine-2, 6-dicarboxamide G-Quadruplex Stabilizers. A Structure-Activity Relationship Study
E Cadoni, PR Magalhães, RM Emídio, E Mendes, J Vítor, J Carvalho, ...
Pharmaceuticals 14 (7), 669, 2021
72021
Dynamical rearrangement of human epidermal growth factor receptor 2 upon antibody binding: effects on the dimerization
P R Magalhães, M Machuqueiro, J G Almeida, A Melo, MN DS Cordeiro, ...
Biomolecules 9 (11), 706, 2019
52019
Arrestin and G Protein Interactions with GPCRs: a Structural Perspective
CAV Barreto, SJ Baptista, B Bueschbell, PR Magalhães, AJ Preto, ...
GPCRs as Therapeutic Targets 1, 109-179, 2022
32022
The World of GPCR dimers–Mapping dopamine receptor D2 homodimers in different activation states and configuration arrangements
B Bueschbell, PR Magalhães, CAV Barreto, R Melo, AC Schiedel, ...
Computational and Structural Biotechnology Journal 21, 4336-4353, 2023
2023
Biochemical studies on the effect of non-enzymatic succinylation of electron transfer flavoprotein
JV Ribeiro, PR Magalhaes, JF Ferreira, H Faustino, PMP Gois, ...
FEBS OPEN BIO 12, 290-291, 2022
2022
Optimization of an in silico protocol to characterize membrane PAINS
PR Magalhães, PBPS Reis, D Vila-Viçosa, M Machuqueiro, BL Victor
2021
Evaluation of different computational approaches to measure water permeabilities in Aquaporins
PR Magalhaes, D Vila-Vicosa, MM Machuqueiro, BL Victor
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 48, S200-S200, 2019
2019
Computational characterization of membrane PAINS
PR Magalhaes, P Reis, D Vila-Vicosa, M Machuqueiro, BL Victor
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 48, S201-S201, 2019
2019
pH effects on PG/PC and PS/PC lipid binary mixtures
PR Magalhães, D Vila-Viçosa, T Silva, M Machuqueiro
Proceedings of MOL2NET 2018, International Conference on Multidisciplinary …, 2018
2018
Inclusion of protonation effects in the simulation of proteins in membrane environments
PR Magalhães
2017
Including acid-base equilibrium in computer simulations using constant-pH molecular dynamics
S Campos, P Magalhaes, C Carvalheda, L Filipe, M Machuqueiro, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015
2015
Constant-pH molecular dynamics simulations of membrane systems: Titrable lipids and proton pumps
S Campos, A Sofia Oliveira, P Magalhaes, D Vila-Vicosa, V Teixeira, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015
2015
Computational study of the conformational preferences of kyotorphin derivatives
SRR Campos, PR Magalhaes, AM Baptista
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 42, S89-S89, 2013
2013
Probing energy transduction mechanisms in bacteriorhodopsin using electrostatic calculations
PR Magalhaes, SRR Campos, ASF Oliveira, CM Soares, AM Baptista
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 42, S92-S92, 2013
2013
Interaction between the neuropeptide kyotorphin and a lipid bilayer: a constant-ph molecular dynamics study
PRSÁ Magalhães
2009
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Articles 1–20