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Michael D Ward
Michael D Ward
Machine Learning Scientist, Generate Biomedicines
Bestätigte E-Mail-Adresse bei generatebiomedicines.com
Titel
Zitiert von
Zitiert von
Jahr
The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA
J Cubuk, JJ Alston, JJ Incicco, S Singh, MD Stuchell-Brereton, MD Ward, ...
Nature communications 12 (1), 1-17, 2021
4382021
SARS-CoV-2 simulations go exascale to capture spike opening and reveal cryptic pockets across the proteome
MI Zimmerman, G Bowman
Biophysical Journal 120 (3), 299a, 2021
240*2021
SARS-CoV-2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential
N Vithani, MD Ward, MI Zimmerman, B Novak, JH Borowsky, S Singh, ...
Biophysical Journal 120 (14), 2880-2889, 2021
682021
Deep learning the structural determinants of protein biochemical properties by comparing structural ensembles with DiffNets
MD Ward, MI Zimmerman, A Meller, M Chung, SJ Swamidass, ...
Nature communications 12 (1), 3023, 2021
512021
Predicting the locations of cryptic pockets from single protein structures using the PocketMiner graph neural network
A Meller, MD Ward, JH Borowsky, JM Lotthammer, M Kshirsagar, ...
Nature Communications 2023 (14), 1177, 2023
432023
Direct tracking of particles and quantification of margination in blood flow
EJ Carboni, BH Bognet, GM Bouchillon, AL Kadilak, LM Shor, MD Ward, ...
Biophysical Journal 111 (7), 1487-1495, 2016
422016
Evaluation of the Hybrid Resolution Pace Model for the Study of Folding, Insertion and Pore Formation of Membrane Associated Peptides
MD Ward, S Nangia, E May
Biophysical Journal 112 (3), 525a, 2017
222017
XenoNet: inference and likelihood of intermediate metabolite formation
NR Flynn, NL Dang, MD Ward, SJ Swamidass
Journal of chemical information and modeling 60 (7), 3431-3449, 2020
182020
Naturally occurring genetic variants in the oxytocin receptor alter receptor signaling profiles
M Malik, MD Ward, Y Fang, JR Porter, MI Zimmerman, T Koelblen, M Roh, ...
ACS Pharmacology & Translational Science 4 (5), 1543-1555, 2021
92021
Deep generative design of epitope-specific binding proteins by latent conformation optimization
RR Eguchi, CA Choe, U Parekh, IS Khalek, MD Ward, N Vithani, ...
bioRxiv, 2022.12. 22.521698, 2022
62022
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2—human interactome
M Kshirsagar, N Tasnina, MD Ward, JN Law, TM Murali, JM Lavista Ferres, ...
BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 154-165, 2020
42020
Bioactivation of isoxazole-containing bromodomain and extra-terminal domain (BET) inhibitors
NR Flynn, MD Ward, MA Schleiff, CMC Laurin, R Farmer, SJ Conway, ...
Metabolites 11 (6), 390, 2021
32021
Predicting cryptic pocket opening from protein structures using graph neural networks
M Ward, A Meller, M Kshirsagar, F Oviedo-Perhavec, J Borowsky, G Miller, ...
Machine Learning for Structural Biology Workshop, NeurIPS 2021, 2021
2021
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