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Timothy E Sweeney
Timothy E Sweeney
Inflammatix Inc; previously @ Stanford
Verified email at alumni.stanford.edu - Homepage
Title
Cited by
Cited by
Year
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis
TE Sweeney, L Braviak, CM Tato, P Khatri
The Lancet Respiratory Medicine 4 (3), 213-224, 2016
3932016
A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set
TE Sweeney, A Shidham, HR Wong, P Khatri
Science translational medicine 7 (287), 287ra71-287ra71, 2015
3192015
The human gut microbiome: a review of the effect of obesity and surgically induced weight loss
TE Sweeney, JM Morton
JAMA surgery 148 (6), 563-569, 2013
3162013
Robust classification of bacterial and viral infections via integrated host gene expression diagnostics
TE Sweeney, HR Wong, P Khatri
Science translational medicine 8 (346), 346ra91-346ra91, 2016
3142016
Heme oxygenase-1 couples activation of mitochondrial biogenesis to anti-inflammatory cytokine expression
CA Piantadosi, CM Withers, RR Bartz, NC MacGarvey, P Fu, TE Sweeney, ...
Journal of Biological Chemistry 286 (18), 16374-16385, 2011
2942011
Unsupervised analysis of transcriptomics in bacterial sepsis across multiple datasets reveals three robust clusters
TE Sweeney, TD Azad, M Donato, WA Haynes, TM Perumal, R Henao, ...
Critical care medicine 46 (6), 915-925, 2018
2432018
Integrated, multi-cohort analysis identifies conserved transcriptional signatures across multiple respiratory viruses
M Andres-Terre, HM McGuire, Y Pouliot, E Bongen, TE Sweeney, ...
Immunity 43 (6), 1199-1211, 2015
1902015
A community approach to mortality prediction in sepsis via gene expression analysis
TE Sweeney, TM Perumal, R Henao, M Nichols, JA Howrylak, AM Choi, ...
Nature communications 9 (1), 694, 2018
1842018
Learning statistical models of phenotypes using noisy labeled training data
V Agarwal, T Podchiyska, JM Banda, V Goel, TI Leung, EP Minty, ...
Journal of the American Medical Informatics Association 23 (6), 1166-1173, 2016
1732016
Redefining critical illness
DM Maslove, B Tang, M Shankar-Hari, PR Lawler, DC Angus, JK Baillie, ...
Nature medicine 28 (6), 1141-1148, 2022
1532022
Metabolic surgery: action via hormonal milieu changes, changes in bile acids or gut microbiota? A summary of the literature
TE Sweeney, JM Morton
Best practice & research Clinical gastroenterology 28 (4), 727-740, 2014
1502014
Methods to increase reproducibility in differential gene expression via meta-analysis
TE Sweeney, WA Haynes, F Vallania, JP Ioannidis, P Khatri
Nucleic acids research 45 (1), e1-e1, 2017
1442017
Complement pathway amplifies caspase-11–dependent cell death and endotoxin-induced sepsis severity
BA Napier, SW Brubaker, TE Sweeney, P Monette, GH Rothmeier, ...
Journal of Experimental Medicine 213 (11), 2365-2382, 2016
1442016
Empowering multi-cohort gene expression analysis to increase reproducibility
WA Haynes, F Vallania, C Liu, E Bongen, A Tomczak, M Andres-Terrč, ...
PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017, 144-153, 2017
1282017
Encouraging mindfulness in medical house staff via smartphone app: a pilot study
L Wen, TE Sweeney, L Welton, M Trockel, L Katznelson
Academic psychiatry 41, 646-650, 2017
1112017
Assessment of validity of a blood-based 3-gene signature score for progression and diagnosis of tuberculosis, disease severity, and treatment response
HC Warsinske, AM Rao, FMF Moreira, PCP Santos, AB Liu, M Scott, ...
JAMA network open 1 (6), e183779-e183779, 2018
1102018
Identifying distinct subgroups of ICU patients: a machine learning approach
KC Vranas, JK Jopling, TE Sweeney, MC Ramsey, AS Milstein, ...
Critical care medicine 45 (10), 1607-1615, 2017
992017
Benchmarking sepsis gene expression diagnostics using public data
TE Sweeney, P Khatri
Critical care medicine 45 (1), 1-10, 2017
932017
Sepsis subclasses: a framework for development and interpretation
KM DeMerle, DC Angus, JK Baillie, E Brant, CS Calfee, J Carcillo, ...
Critical care medicine 49 (5), 748-759, 2021
902021
Co-regulation of nuclear respiratory factor-1 by NFκB and CREB links LPS-induced inflammation to mitochondrial biogenesis
HB Suliman, TE Sweeney, CM Withers, CA Piantadosi
Journal of cell science 123 (15), 2565-2575, 2010
882010
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Articles 1–20