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Nicholas Bokulich
Nicholas Bokulich
ETH Zürich
Bestätigte E-Mail-Adresse bei ethz.ch - Startseite
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Zitiert von
Zitiert von
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
101332019
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ...
Nature methods 10 (1), 57-59, 2013
32552013
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ...
Microbiome 6 (1), 1-17, 2018
26412018
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
18092017
Antibiotics, birth mode, and diet shape microbiome maturation during early life
NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, A D. Lieber, ...
Science translational medicine 8 (343), 343ra82-343ra82, 2016
11482016
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ...
Nature medicine 22 (3), 250-253, 2016
9332016
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
NA Bokulich, JH Thorngate, PM Richardson, DA Mills
Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014
8352014
The soil microbiome influences grapevine-associated microbiota
I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ...
MBio 6 (2), e02527-14, 2015
6542015
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities
NA Bokulich, DA Mills
Applied and environmental microbiology 79 (8), 2519-2526, 2013
4252013
The microbiology of malting and brewing
NA Bokulich, CW Bamforth
Microbiology and Molecular Biology Reviews 77 (2), 157-172, 2013
3892013
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ...
Nature communications 6 (1), 7486, 2015
3422015
Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics
NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ...
MBio 7 (3), e00631-16, 2016
2992016
Next-generation sequencing reveals significant bacterial diversity of botrytized wine
NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills
PloS one 7 (5), e36357, 2012
2612012
Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants
NA Bokulich, DA Mills
Applied and environmental microbiology 79 (17), 5214-5223, 2013
2582013
Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale
NA Bokulich, CW Bamforth, DA Mills
PloS one 7 (4), e35507, 2012
2102012
Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study
MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ...
Journal of proteome research 14 (1), 491-502, 2015
1932015
Learning representations of microbe–metabolite interactions
JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ...
Nature methods 16 (12), 1306-1314, 2019
1882019
RESCRIPt: Reproducible sequence taxonomy reference database management
MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ...
PLoS computational biology 17 (11), e1009581, 2021
1812021
Monitoring seasonal changes in winery-resident microbiota
NA Bokulich, M Ohta, PM Richardson, DA Mills
PloS one 8 (6), e66437, 2013
1812013
Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet
D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ...
Genome medicine 8, 1-20, 2016
1622016
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