Pekka Marttinen
Pekka Marttinen
Aalto University
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Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
J Corander, P Marttinen, J Sirén, J Tang
BMC bioinformatics 9 (1), 1-14, 2008
Bayesian identification of admixture events using multilocus molecular markers
J Corander, P Marttinen
Molecular ecology 15 (10), 2833-2843, 2006
BAPS 2: enhanced possibilities for the analysis of genetic population structure
J Corander, P Waldmann, P Marttinen, MJ Sillanpää
Bioinformatics 20 (15), 2363-2369, 2004
Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus
N Kashtan, SE Roggensack, S Rodrigue, JW Thompson, SJ Biller, A Coe, ...
Science 344 (6182), 416-420, 2014
Dense genomic sampling identifies highways of pneumococcal recombination
C Chewapreecha, SR Harris, NJ Croucher, C Turner, P Marttinen, ...
Nature genetics 46 (3), 305-309, 2014
A survey on knowledge graphs: Representation, acquisition, and applications
S Ji, S Pan, E Cambria, P Marttinen, SY Philip
IEEE Transactions on Neural Networks and Learning Systems, 2021
A Bayesian method for identification of stock mixtures from molecular marker data
J Corrander, P Marttinen, S Mäntyniemi
Fishery Bulletin 104 (4), 550-558, 2006
Detection of recombination events in bacterial genomes from large population samples
P Marttinen, WP Hanage, NJ Croucher, TR Connor, SR Harris, ...
Nucleic acids research 40 (1), e6-e6, 2012
Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes
C Chewapreecha, P Marttinen, NJ Croucher, SJ Salter, SR Harris, ...
PLoS genetics 10 (8), e1004547, 2014
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
JA Lees, M Vehkala, N Välimäki, SR Harris, C Chewapreecha, ...
Nature Communications 7, 12797, 2016
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 1-17, 2019
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
SK Sheppard, L Cheng, G Méric, CPA De Haan, AK Llarena, P Marttinen, ...
Molecular ecology 23 (10), 2442-2451, 2014
Efficient inference of recent and ancestral recombination within bacterial populations
R Mostowy, NJ Croucher, CP Andam, J Corander, WP Hanage, ...
Molecular biology and evolution 34 (5), 1167-1182, 2017
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus
S Castillo-Ramírez, J Corander, P Marttinen, M Aldeljawi, WP Hanage, ...
Genome biology 13 (12), 1-13, 2012
metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis
A Cichonska, J Rousu, P Marttinen, AJ Kangas, P Soininen, T Lehtimäki, ...
Bioinformatics 32 (13), 1981-1989, 2016
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7 (1), 1-10, 2016
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact
RA Gladstone, SW Lo, JA Lees, NJ Croucher, AJ Van Tonder, J Corander, ...
EBioMedicine 43, 338-346, 2019
Bayesian search of functionally divergent protein subgroups and their function specific residues
P Marttinen, J Corander, P Törönen, L Holm
Bioinformatics 22 (20), 2466-2474, 2006
Reconstructing population histories from single nucleotide polymorphism data
J Sirén, P Marttinen, J Corander
Molecular biology and evolution 28 (1), 673-683, 2011
Efficient acquisition rules for model-based approximate Bayesian computation
M Järvenpää, MU Gutmann, A Pleska, A Vehtari, P Marttinen
Bayesian Analysis 14 (2), 595-622, 2019
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