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Sharif Shaaban
Sharif Shaaban
Bioinformatician, Public Health Scotland, NHS Scotland
Verified email at phs.scot - Homepage
Title
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Cited by
Year
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
10642021
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
8122022
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway
BJ Willett, J Grove, OA MacLean, C Wilkie, G De Lorenzo, W Furnon, ...
Nature microbiology 7 (8), 1161-1179, 2022
4252022
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 2021
4252021
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
3392021
SnapperDB: a database solution for routine sequencing analysis of bacterial isolates
T Dallman, P Ashton, U Schafer, A Jironkin, A Painset, S Shaaban, ...
Bioinformatics 34 (17), 3028-3029, 2018
1722018
The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism
BJ Willett, J Grove, OA MacLean, C Wilkie, N Logan, GD Lorenzo, ...
MedRxiv, 2022.01. 03.21268111, 2022
1672022
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant
P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ...
Science 374 (6574), eabl9551, 2021
1162021
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
A da Silva Filipe, JG Shepherd, T Williams, J Hughes, E Aranday-Cortes, ...
Nature Microbiology 6 (1), 112-122, 2021
1022021
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
TI de Silva, G Liu, BB Lindsey, D Dong, SC Moore, NS Hsu, D Shah, ...
Iscience 24 (11), 2021
622021
Shiga toxin sub-type 2a increases the efficiency of Escherichia coli O157 transmission between animals and restricts epithelial regeneration in bovine enteroids
SF Fitzgerald, AE Beckett, J Palarea-Albaladejo, S McAteer, S Shaaban, ...
PLoS pathogens 15 (10), e1008003, 2019
422019
Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing
S Shaaban, LA Cowley, SP McAteer, C Jenkins, TJ Dallman, JL Bono, ...
Microbial genomics 2 (12), e000096, 2016
422016
Validation of whole-genome sequencing for identification and characterization of Shiga toxin-producing Escherichia coli to produce standardized data to enable data sharing
A Holmes, TJ Dallman, S Shabaan, M Hanson, L Allison
Journal of clinical microbiology 56 (3), 10.1128/jcm. 01388-17, 2018
332018
Combined epidemiological and genomic analysis of nosocomial SARS-CoV-2 infection early in the pandemic and the role of unidentified cases in transmission
LB Snell, CL Fisher, U Taj, O Stirrup, B Merrick, A Alcolea-Medina, ...
Clinical Microbiology and Infection 28 (1), 93-100, 2022
252022
Genomic epidemiology of SARS-CoV-2 spread in Scotland highlights the role of European travel in COVID-19 emergence
ADS Filipe, J Shepherd, T Williams, J Hughes, E Aranday-Cortes, ...
MedRxiv, 2020.06. 08.20124834, 2020
252020
Genome structural variation in Escherichia coli O157:H7
SF Fitzgerald, N Lupolova, S Shaaban, TJ Dallman, D Greig, L Allison, ...
Microbial genomics 7 (11), 000682, 2021
132021
Epidemic waves of COVID-19 in Scotland: a genomic perspective on the impact of the introduction and relaxation of lockdown on SARS-CoV-2
SJ Lycett, J Hughes, MP McHugh, A da Silva Filipe, R Dewar, L Lu, ...
MedRxiv, 2021.01. 08.20248677, 2021
122021
Evolutionary context of non–sorbitol-fermenting Shiga toxin–producing Escherichia coli O55: H7
K Schutz, LA Cowley, S Shaaban, A Carroll, E McNamara, DL Gally, ...
Emerging infectious diseases 23 (12), 1966, 2017
112017
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning
S Nickbakhsh, J Hughes, N Christofidis, E Griffiths, S Shaaban, J Enright, ...
Scientific Reports 12 (1), 11735, 2022
92022
The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis
DJ Pascall, E Vink, R Blacow, N Bulteel, A Campbell, R Campbell, ...
Plos one 18 (4), e0284187, 2023
72023
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