| PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification R Vadigepalli, P Chakravarthula, DE Zak, JS Schwaber, GE Gonye Omics A Journal of Integrative Biology 7 (3), 235-252, 2003 | 158 | 2003 |
| A distributed state estimation and control algorithm for plantwide processes R Vadigepalli, FJ Doyle IEEE Transactions on Control Systems Technology 11 (1), 119-127, 2003 | 100 | 2003 |
| Robust control of a multivariable experimental four-tank system R Vadigepalli, EP Gatzke, FJ Doyle Industrial & engineering chemistry research 40 (8), 1916-1927, 2001 | 83 | 2001 |
| Decorin protein core affects the global gene expression profile of the tumor microenvironment in a triple-negative orthotopic breast carcinoma xenograft model S Buraschi, T Neill, RT Owens, LA Iniguez, G Purkins, R Vadigepalli, ... PloS one 7 (9), e45559, 2012 | 76 | 2012 |
| Chronic Ethanol Feeding Alters mi RNA Expression Dynamics During Liver Regeneration RP Dippold, R Vadigepalli, GE Gonye, B Patra, JB Hoek Alcoholism: Clinical and Experimental Research 37, E59-E69, 2013 | 67 | 2013 |
| Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network GM Miller, BA Ogunnaike, JS Schwaber, R Vadigepalli BMC systems biology 4 (1), 1-17, 2010 | 67 | 2010 |
| Erythroid-induced commitment of K562 cells results in clusters of differentially expressed genes enriched for specific transcription regulatory elements S Addya, MA Keller, K Delgrosso, CM Ponte, R Vadigepalli, GE Gonye, ... Physiological genomics 19 (1), 117-130, 2004 | 66 | 2004 |
| MicroRNA profiling in lung cancer reveals new molecular markers for diagnosis CC Solomides, BJ Evans, JM Navenot, R Vadigepalli, SC Peiper, Z Wang Acta cytologica 56 (6), 645-654, 2012 | 63 | 2012 |
| Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei K Freeman, A Brureau, R Vadigepalli, MM Staehle, MM Brureau, ... Journal of neuroinflammation 9 (1), 1-11, 2012 | 47 | 2012 |
| Structural analysis of large-scale systems for distributed state estimation and control applications R Vadigepalli, FJ Doyle Iii Control Engineering Practice 11 (8), 895-905, 2003 | 43 | 2003 |
| Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats RP Dippold, R Vadigepalli, GE Gonye, JB Hoek American Journal of Physiology-Gastrointestinal and Liver Physiology 303 (6 …, 2012 | 42 | 2012 |
| HuR contributes to TRAIL resistance by restricting death receptor 4 expression in pancreatic cancer cells C Romeo, MC Weber, M Zarei, D DeCicco, SN Chand, AD Lobo, ... Molecular Cancer Research 14 (7), 599-611, 2016 | 40 | 2016 |
| Effects of developmental lead exposure on the hippocampal transcriptome: influences of sex, developmental period, and lead exposure level JS Schneider, DW Anderson, K Talsania, W Mettil, R Vadigepalli Toxicological Sciences 129 (1), 108-125, 2012 | 40 | 2012 |
| Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat E Juskeviciute, R Vadigepalli, JB Hoek BMC genomics 9 (1), 1-15, 2008 | 36 | 2008 |
| Inputs drive cell phenotype variability J Park, A Brureau, K Kernan, A Starks, S Gulati, B Ogunnaike, J Schwaber, ... Genome research 24 (6), 930-941, 2014 | 34 | 2014 |
| Continuous-time identification of gene expression models DE Zak, RK Pearson, R Vadigepalli, GE Gonye, JS Schwaber, FJ Doyle Iii OMICS A Journal of Integrative Biology 7 (4), 373-386, 2003 | 34 | 2003 |
| Sex-based differences in gene expression in hippocampus following postnatal lead exposure JS Schneider, DW Anderson, H Sonnenahalli, R Vadigepalli Toxicology and applied pharmacology 256 (2), 179-190, 2011 | 33 | 2011 |
| Single-cell transcriptional analysis reveals novel neuronal phenotypes and interaction networks involved in the central circadian clock J Park, H Zhu, S O'Sullivan, BA Ogunnaike, DR Weaver, JS Schwaber, ... Frontiers in neuroscience 10, 481, 2016 | 31 | 2016 |
| Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius MY Covarrubias, RL Khan, R Vadigepalli, JB Hoek, JS Schwaber Physiological genomics 24 (1), 45-58, 2006 | 31 | 2006 |
| From promoter analysis to transcriptional regulatory network prediction using PAINT GE Gonye, P Chakravarthula, JS Schwaber, R Vadigepalli Gene Function Analysis, 49-68, 2007 | 30 | 2007 |
