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Romina Oliva
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Towards the online computer-aided design of catalytic pockets
L Falivene, Z Cao, A Petta, L Serra, A Poater, R Oliva, V Scarano, ...
Nature Chemistry 11 (10), 872-879, 2019
7642019
SambVca 2. A web tool for analyzing catalytic pockets with topographic steric maps
L Falivene, R Credendino, A Poater, A Petta, L Serra, R Oliva, V Scarano, ...
Organometallics 35 (13), 2286-2293, 2016
7192016
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes
A Vangone, R Spinelli, V Scarano, L Cavallo, R Oliva
Bioinformatics 27 (20), 2915-2916, 2011
2772011
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Structural and kinetic characterization of native laccases from Pleurotus ostreatus, Rigidoporus lignosus, and Trametes trogii
AM Garzillo, MC Colao, V Buonocore, R Oliva, L Falcigno, M Saviano, ...
Journal of protein chemistry 20, 191-201, 2001
1432001
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions
R Oliva, L Cavallo, A Tramontano
Nucleic acids research 34 (3), 865-879, 2006
1012006
Mg2+ binding and archaeosine modification stabilize the G15–C48 Levitt base pair in tRNAs
R Oliva, A Tramontano, L Cavallo
rna 13 (9), 1427-1436, 2007
992007
An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies
M Chawla, R Oliva, JM Bujnicki, L Cavallo
Nucleic acids research 43 (14), 6714-6729, 2015
792015
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
Electrostatics of aquaporin and aquaglyceroporin channels correlates with their transport selectivity
R Oliva, G Calamita, JM Thornton, M Pellegrini-Calace
Proceedings of the National Academy of Sciences 107 (9), 4135-4140, 2010
642010
Frequency and Effect of the Binding of Mg2+, Mn2+, and Co2+ Ions on the Guanine Base in Watson−Crick and Reverse Watson−Crick Base Pairs
R Oliva, L Cavallo
The Journal of Physical Chemistry B 113 (47), 15670-15678, 2009
582009
Occurrence and stability of lone pair–π stacking interactions between ribose and nucleobases in functional RNAs
M Chawla, E Chermak, Q Zhang, JM Bujnicki, R Oliva, L Cavallo
Nucleic acids research 45 (19), 11019-11032, 2017
552017
Higher order structural effects stabilizing the reverse Watson–Crick Guanine-Cytosine base pair in functional RNAs
M Chawla, S Abdel-Azeim, R Oliva, L Cavallo
Nucleic acids research 42 (2), 714-726, 2014
472014
CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts
E Chermak, A Petta, L Serra, A Vangone, V Scarano, L Cavallo, R Oliva
Bioinformatics 31 (9), 1481-1483, 2015
432015
Ranking multiple docking solutions based on the conservation of inter‐residue contacts
R Oliva, A Vangone, L Cavallo
Proteins: Structure, Function, and Bioinformatics 81 (9), 1571-1584, 2013
432013
Yeast as a model of human mitochondrial tRNA base substitutions: investigation of the molecular basis of respiratory defects
A Montanari, C Besagni, C De Luca, V Morea, R Oliva, A Tramontano, ...
Rna 14 (2), 275-283, 2008
422008
A novel method for improved accuracy of transcription factor binding site prediction
AM Khamis, O Motwalli, R Oliva, BR Jankovic, YA Medvedeva, H Ashoor, ...
Nucleic acids research 46 (12), e72-e72, 2018
392018
In silico study of human aquaporin AQP11 and AQP12 channels
L Calvanese, M Pellegrini‐Calace, R Oliva
Protein Science 22 (4), 455-466, 2013
392013
Can yeast be used to study mitochondrial diseases? Biolistic tRNA mutants for the analysis of mechanisms and suppressors
C De Luca, YF Zhou, A Montanari, V Morea, R Oliva, C Besagni, ...
Mitochondrion 9 (6), 408-417, 2009
382009
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