Nathan E Lewis
Nathan E Lewis
Bestätigte E-Mail-Adresse bei ucsd.edu - Startseite
TitelZitiert vonJahr
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
11932011
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
X Xu*, H Nagarajan*, NE Lewis*, S Pan*, Z Cai*, X Liu, W Chen, M Xie, ...
Nature biotechnology 29 (8), 735, 2011
6102011
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
NE Lewis, H Nagarajan, BO Palsson
Nature Reviews Microbiology 10 (4), 291, 2012
5812012
Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models
NE Lewis, KK Hixson, TM Conrad, JA Lerman, P Charusanti, AD Polpitiya, ...
Molecular systems biology 6 (1), 2010
3682010
Design and analysis of synthetic carbon fixation pathways
A Bar-Even, E Noor, NE Lewis, R Milo
Proceedings of the National Academy of Sciences 107 (19), 8889-8894, 2010
2872010
Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome
NE Lewis*, X Liu*, Y Li*, H Nagarajan*, G Yerganian, E O'brien, ...
Nature biotechnology 31 (8), 759, 2013
2722013
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
ZA King, J Lu, A Dräger, P Miller, S Federowicz, JA Lerman, A Ebrahim, ...
Nucleic acids research 44 (D1), D515-D522, 2015
2632015
Microbial laboratory evolution in the era of genome‐scale science
TM Conrad, NE Lewis, BØ Palsson
Molecular systems biology 7 (1), 2011
2262011
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ...
Nature biotechnology 28 (12), 1279, 2010
2262010
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi
Molecular systems biology 6 (1), 2010
2182010
Network context and selection in the evolution to enzyme specificity
H Nam*, NE Lewis*, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson
Science 337 (6098), 1101-1104, 2012
2032012
The role of replicates for error mitigation in next-generation sequencing
K Robasky*, NE Lewis*, GM Church
Nature Reviews Genetics 15 (1), 56, 2014
1962014
In silico method for modelling metabolism and gene product expression at genome scale
JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ...
Nature communications 3, 929, 2012
1962012
Analysis of low-abundance, low-molecular-weight serum proteins using mass spectrometry
K Merrell, K Southwick, SW Graves, MS Esplin, NE Lewis, CD Thulin
Journal of biomolecular techniques: JBT 15 (4), 238, 2004
1532004
Elimination of thermodynamically infeasible loops in steady-state metabolic models
J Schellenberger, NE Lewis, BØ Palsson
Biophysical journal 100 (3), 544-553, 2011
1492011
Analysis of omics data with genome-scale models of metabolism
DR Hyduke, NE Lewis, BØ Palsson
Molecular BioSystems 9 (2), 167-174, 2013
1412013
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
TM Conrad, M Frazier, AR Joyce, BK Cho, EM Knight, NE Lewis, ...
Proceedings of the National Academy of Sciences 107 (47), 20500-20505, 2010
1402010
Recon 2.2: from reconstruction to model of human metabolism
N Swainston, K Smallbone, H Hefzi, PD Dobson, J Brewer, M Hanscho, ...
Metabolomics 12 (7), 109, 2016
1312016
Proteomic analysis of Chinese hamster ovary cells
D Baycin-Hizal, DL Tabb, R Chaerkady, L Chen, NE Lewis, H Nagarajan, ...
Journal of proteome research 11 (11), 5265-5276, 2012
1302012
Combinatorial CRISPR–Cas9 screens for de novo mapping of genetic interactions
JP Shen, D Zhao, R Sasik, J Luebeck, A Birmingham, ...
Nature methods 14 (6), 573, 2017
1192017
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