Julien Yann Dutheil
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Insights into hominid evolution from the gorilla genome sequence
A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ...
Nature 483 (7388), 169-175, 2012
6372012
Comparative and demographic analysis of orang-utan genomes
DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ...
Nature 469 (7331), 529-533, 2011
5372011
The bonobo genome compared with the chimpanzee and human genomes
K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ...
Nature 486 (7404), 527-531, 2012
4612012
Recombination difference between sexes: a role for haploid selection
T Lenormand, J Dutheil
PLoS Biol 3 (3), e63, 2005
1942005
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
A Hobolth, JY Dutheil, J Hawks, MH Schierup, T Mailund
Genome research 21 (3), 349-356, 2011
1922011
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
EH Stukenbrock, T Bataillon, JY Dutheil, TT Hansen, R Li, M Zala, ...
Genome research 21 (12), 2157-2166, 2011
1652011
Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs
J Dutheil, B Boussau
BMC evolutionary biology 8 (1), 255, 2008
1232008
Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species
EH Stukenbrock, FB Christiansen, TT Hansen, JY Dutheil, MH Schierup
Proceedings of the National Academy of Sciences 109 (27), 10954-10959, 2012
1202012
Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics
J Dutheil, S Gaillard, E Bazin, S Glémin, V Ranwez, N Galtier, K Belkhir
BMC bioinformatics 7 (1), 188, 2006
1202006
A model-based approach for detecting coevolving positions in a molecule
J Dutheil, T Pupko, A Jean-Marie, N Galtier
Molecular biology and evolution 22 (9), 1919-1928, 2005
1162005
Bio++: efficient extensible libraries and tools for computational molecular evolution
L Guéguen, S Gaillard, B Boussau, M Gouy, M Groussin, NC Rochette, ...
Molecular biology and evolution 30 (8), 1745-1750, 2013
1042013
Ancestral population genomics: the coalescent hidden Markov model approach
JY Dutheil, G Ganapathy, A Hobolth, T Mailund, MK Uyenoyama, ...
Genetics 183 (1), 259-274, 2009
1032009
A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species
T Mailund, AE Halager, M Westergaard, JY Dutheil, K Munch, ...
PLoS Genet 8 (12), e1003125, 2012
982012
A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species
T Mailund, AE Halager, M Westergaard, JY Dutheil, K Munch, ...
PLoS Genet 8 (12), e1003125, 2012
982012
ape: Analyses of Phylogenetics and Evolution
E Paradis, K Strimmer, J Claude, G Jobb, R Opgen-Rhein, J Dutheil, ...
R package 1, 2005
922005
Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model
T Mailund, JY Dutheil, A Hobolth, G Lunter, MH Schierup
PLoS Genet 7 (3), e1001319, 2011
912011
A tale of genome compartmentalization: the evolution of virulence clusters in smut fungi
JY Dutheil, G Mannhaupt, G Schweizer, C MK Sieber, M Münsterkötter, ...
Genome biology and evolution 8 (3), 681-704, 2016
652016
Detecting groups of coevolving positions in a molecule: a clustering approach
J Dutheil, N Galtier
BMC evolutionary biology 7 (1), 242, 2007
522007
Extreme selective sweeps independently targeted the X chromosomes of the great apes
K Nam, K Munch, A Hobolth, JY Dutheil, KR Veeramah, AE Woerner, ...
Proceedings of the National Academy of Sciences 112 (20), 6413-6418, 2015
502015
Efficient selection of branch-specific models of sequence evolution
JY Dutheil, N Galtier, J Romiguier, EJP Douzery, V Ranwez, B Boussau
Molecular biology and evolution 29 (7), 1861-1874, 2012
502012
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