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Rosalba Lepore
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SWISS-MODEL: homology modelling of protein structures and complexes
A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ...
Nucleic acids research 46 (W1), W296-W303, 2018
95872018
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
4072016
Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group
L De Mattos-Arruda, M Vazquez, F Finotello, R Lepore, E Porta, J Hundal, ...
Annals of oncology 31 (8), 978-990, 2020
922020
Insights on protein thermal stability: a graph representation of molecular interactions
M Miotto, PP Olimpieri, L Di Rienzo, F Ambrosetti, P Corsi, R Lepore, ...
Bioinformatics 35 (15), 2569-2577, 2019
792019
PIGSPro: prediction of immunoGlobulin structures v2
R Lepore, PP Olimpieri, MA Messih, A Tramontano
Nucleic Acids Research 45 (W1), W17-W23, 2017
592017
PepComposer: computational design of peptides binding to a given protein surface
A Obarska-Kosinska, A Iacoangeli, R Lepore, A Tramontano
Nucleic acids research 44 (W1), W522-W528, 2016
502016
Artemether resistance in vitro is linked to mutations in PfATP6 that also interact with mutations in PfMDR1 in travellers returning with Plasmodium falciparum infections
DR Pillai, R Lau, K Khairnar, R Lepore, A Via, HM Staines, S Krishna
Malaria journal 11, 1-9, 2012
482012
Heterogeneous infectivity and pathogenesis of SARS-CoV-2 variants beta, delta and omicron in transgenic K18-hACE2 and wildtype mice
F Tarrés-Freixas, B Trinité, A Pons-Grífols, M Romero-Durana, ...
Frontiers in microbiology 13, 840757, 2022
422022
Multistep current signal in protein translocation through graphene nanopores
EL Bonome, R Lepore, D Raimondo, F Cecconi, A Tramontano, ...
The Journal of Physical Chemistry B 119 (18), 5815-5823, 2015
392015
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies
MA Messih, R Lepore, P Marcatili, A Tramontano
Bioinformatics 30 (19), 2733-2740, 2014
392014
LoopIng: a template-based tool for predicting the structure of protein loops
MA Messih, R Lepore, A Tramontano
Bioinformatics 31 (23), 3767-3772, 2015
362015
Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition
A Caroli, S Simeoni, R Lepore, A Tramontano, A Via
Biochemical and biophysical research communications 417 (1), 576-581, 2012
362012
Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen
L Di Rienzo, E Milanetti, R Lepore, PP Olimpieri, A Tramontano
Scientific reports 7 (1), 45053, 2017
272017
Target highlights in CASP14: Analysis of models by structure providers
LT Alexander, R Lepore, A Kryshtafovych, A Adamopoulos, M Alahuhta, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1647-1672, 2021
262021
DGLinker: flexible knowledge-graph prediction of disease–gene associations
J Hu, R Lepore, RJB Dobson, A Al-Chalabi, D M. Bean, A Iacoangeli
Nucleic acids research 49 (W1), W153-W161, 2021
222021
Previous SARS-CoV-2 infection increases B. 1.1. 7 cross-neutralization by vaccinated individuals
B Trinité, E Pradenas, S Marfil, C Rovirosa, V Urrea, F Tarrés-Freixas, ...
Viruses 13 (6), 1135, 2021
222021
Modeling of protein tertiary and quaternary structures based on evolutionary information
G Studer, G Tauriello, S Bienert, AM Waterhouse, M Bertoni, L Bordoli, ...
Computational Methods in Protein Evolution, 301-316, 2019
202019
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling
R Lorrai, F Gandolfi, A Boccaccini, V Ruta, M Possenti, A Tramontano, ...
Scientific Reports 8 (1), 15895, 2018
192018
Identification of the Schistosoma mansoni molecular target for the antimalarial drug artemether
R Lepore, S Simeoni, D Raimondo, A Caroli, A Tramontano, A Via
Journal of chemical information and modeling 51 (11), 3005-3016, 2011
172011
Assessing the accuracy of contact and distance predictions in CASP14
V Ruiz‐Serra, C Pontes, E Milanetti, A Kryshtafovych, R Lepore, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1888-1900, 2021
142021
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