| Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy C Ounkomol, S Seshamani, MM Maleckar, F Collman, GR Johnson Nature methods 15 (11), 917-920, 2018 | 423 | 2018 |
| Building a 3D integrated cell GR Johnson, RM Donovan-Maiye, MM Maleckar bioRxiv, 238378, 2017 | 46 | 2017 |
| Degradation of protein translation machinery by amino acid starvation-induced macroautophagy C Gretzmeier, S Eiselein, GR Johnson, R Engelke, H Nowag, M Zarei, ... Autophagy 13 (6), 1064-1075, 2017 | 37 | 2017 |
| Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes KA Gerbin, T Grancharova, RM Donovan-Maiye, MC Hendershott, ... Cell Systems 12 (6), 670-687. e10, 2021 | 36 | 2021 |
| Joint modeling of cell and nuclear shape variation GR Johnson, TE Buck, DP Sullivan, GK Rohde, RF Murphy Molecular Biology of the Cell 26 (22), 4046-4056, 2015 | 35 | 2015 |
| Systems, devices, and methods for image processing to generate an image having predictive tagging G Johnson, C Ounkomol, F Collman, S Seshamani US Patent 10,935,773, 2021 | 27 | 2021 |
| Automated learning of subcellular variation among punctate protein patterns and a generative model of their relation to microtubules GR Johnson, J Li, A Shariff, GK Rohde, RF Murphy PLoS computational biology 11 (12), e1004614, 2015 | 26 | 2015 |
| Integrated intracellular organization and its variations in human iPS cells MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... Nature 613 (7943), 345-354, 2023 | 21 | 2023 |
| Processing of challenged fractions and cracked co-feeds SH Brown, BA Cunningham, RJ Smiley, S Ilias, JR McMANUS, ... US Patent App. 15/790,223, 2018 | 17 | 2018 |
| Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable MP Viana, J Chen, TA Knijnenburg, R Vasan, C Yan, JE Arakaki, M Bailey, ... BioRxiv, 2020.12. 08.415562, 2020 | 15 | 2020 |
| A deep generative model of 3D single-cell organization RM Donovan-Maiye, JM Brown, CK Chan, L Ding, C Yan, N Gaudreault, ... PLOS Computational Biology 18 (1), e1009155, 2022 | 13 | 2022 |
| Point process models for localization and interdependence of punctate cellular structures Y Li, TD Majarian, AW Naik, GR Johnson, RF Murphy Cytometry Part A 89 (7), 633-643, 2016 | 12 | 2016 |
| Applications and challenges of machine learning to enable realistic cellular simulations R Vasan, MP Rowan, CT Lee, GR Johnson, P Rangamani, M Holst Frontiers in physics 7, 247, 2020 | 6 | 2020 |
| Three dimensional cross-modal image inference: label-free methods for subcellular structure prediction C Ounkomol, DA Fernandes, S Seshamani, MM Maleckar, F Collman, ... bioRxiv, 216606, 2017 | 6 | 2017 |
| Image-derived models of cell organization changes during differentiation and drug treatments X Ruan, GR Johnson, I Bierschenk, R Nitschke, M Boerries, H Busch, ... Molecular biology of the cell 31 (7), 655-666, 2020 | 5 | 2020 |
| Studying stem cell organization using “label-free” methods and a novel generative adversarial model G Johnson, R Donovan-Maiye, C Ounkomol, MM Maleckar Biophysical Journal 114 (3), 43a, 2018 | 4 | 2018 |
| Systems, devices, and methods for image processing to generate an image having predictive tagging G Johnson, C Ounkomol, F Collman, S Seshamani US Patent 11,614,610, 2023 | 3 | 2023 |
| A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts GR Johnson, JD Kangas, A Dovzhenko, R Trojok, K Voigt, TD Majarian, ... Cytometry Part A 91 (4), 326-335, 2017 | 3 | 2017 |
| Image-derived models of cell organization changes during differentiation of PC12 cells X Ruan, GR Johnson, I Bierschenk, R Nitschke, M Boerries, H Busch, ... BioRXiv, 522763, 2019 | 2 | 2019 |
| Systems, devices, and methods for image processing to generate an image having predictive tagging G Johnson, C Ounkomol, F Collman, S Seshamani US Patent App. 18/170,076, 2023 | | 2023 |
Forrest CollmanAllen Institute for Brain ScienceVerified email at alleninstitute.org
