Fernando Amat Gil
Zitiert von
Zitiert von
Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy
R Tomer, K Khairy, F Amat, PJ Keller
Nature methods 9 (7), 755-763, 2012
Cortical representations of olfactory input by trans-synaptic tracing
K Miyamichi, F Amat, F Moussavi, C Wang, I Wickersham, NR Wall, ...
Nature 472 (7342), 191-196, 2011
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
F Amat, W Lemon, DP Mossing, K McDole, Y Wan, K Branson, EW Myers, ...
Nature methods 11 (9), 951-958, 2014
In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
K McDole, L Guignard, F Amat, A Berger, G Malandain, LA Royer, ...
Cell 175 (3), 859-876. e33, 2018
Efficient Bayesian-based multiview deconvolution
S Preibisch, F Amat, E Stamataki, M Sarov, RH Singer, E Myers, ...
Nature methods 11 (6), 645-648, 2014
Whole-animal functional and developmental imaging with isotropic spatial resolution
RK Chhetri, F Amat, Y Wan, B Höckendorf, WC Lemon, PJ Keller
Nature methods 12 (12), 1171-1178, 2015
Markov random field based automatic image alignment for electron tomography
F Amat, F Moussavi, LR Comolli, G Elidan, KH Downing, M Horowitz
Journal of structural biology 161 (3), 260-275, 2008
Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos
J Stegmaier, F Amat, WC Lemon, K McDole, Y Wan, G Teodoro, R Mikut, ...
Developmental cell 36 (2), 225-240, 2016
Automated reconstruction of neuronal morphology based on local geometrical and global structural models
T Zhao, J Xie, F Amat, N Clack, P Ahammad, H Peng, F Long, E Myers
Neuroinformatics 9 (2), 247-261, 2011
Efficient processing and analysis of large-scale light-sheet microscopy data
F Amat, B Höckendorf, Y Wan, WC Lemon, K McDole, PJ Keller
Nature protocols 10 (11), 1679-1696, 2015
Fast and robust optical flow for time-lapse microscopy using super-voxels
F Amat, EW Myers, PJ Keller
Bioinformatics 29 (3), 373-380, 2013
Semantic-based indexing of fetal anatomies from 3-D ultrasound data using global/semi-local context and sequential sampling
G Carneiro, F Amat, B Georgescu, S Good, D Comaniciu
2008 IEEE Conference on Computer Vision and Pattern Recognition, 1-8, 2008
Alphabet soup: A framework for approximate energy minimization
S Gould, F Amat, D Koller
2009 IEEE Conference on Computer Vision and Pattern Recognition, 903-910, 2009
Towards comprehensive cell lineage reconstructions in complex organisms using light‐sheet microscopy
F Amat, PJ Keller
Development, growth & differentiation 55 (4), 563-578, 2013
Automated fetal measurement from three-dimensional ultrasound data
GHM de Barros Carneiro, F Amat, B Georgescu, S Good, D Comaniciu
US Patent 8,556,814, 2013
Analysis of the Intact Surface Layer of Caulobacter crescentus by Cryo-Electron Tomography
F Amat, LR Comolli, JF Nomellini, F Moussavi, KH Downing, J Smit, ...
Journal of bacteriology 192 (22), 5855-5865, 2010
Subtomogram alignment by adaptive Fourier coefficient thresholding
F Amat, LR Comolli, F Moussavi, J Smit, KH Downing, M Horowitz
Journal of structural biology 171 (3), 332-344, 2010
Alignment of cryo-electron tomography datasets
F Amat, D Castano-Diez, A Lawrence, F Moussavi, H Winkler, M Horowitz
Methods in enzymology 482, 343-367, 2010
3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes
F Moussavi, G Heitz, F Amat, LR Comolli, D Koller, M Horowitz
Journal of structural biology 170 (1), 134-145, 2010
A preferred curvature-based continuum mechanics framework for modeling embryogenesis
K Khairy, W Lemon, F Amat, PJ Keller
Biophysical journal 114 (2), 267-277, 2018
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