Walter Pirovano
Walter Pirovano
Director Bioinformatics, BaseClear B.V.
Verified email at - Homepage
Cited by
Cited by
Scaffolding pre-assembled contigs using SSPACE
M Boetzer, CV Henkel, HJ Jansen, D Butler, W Pirovano
Bioinformatics 27 (4), 578-579, 2011
Toward almost closed genomes with GapFiller
M Boetzer, W Pirovano
Genome biology 13 (6), R56, 2012
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
M Boetzer, W Pirovano
BMC bioinformatics 15 (1), 211, 2014
The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system
FJ Vonk, NR Casewell, CV Henkel, AM Heimberg, HJ Jansen, ...
Proceedings of the National Academy of Sciences 110 (51), 20651-20656, 2013
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2010
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
First draft genome sequence of the Japanese eel, Anguilla japonica
CV Henkel, RP Dirks, DL de Wijze, Y Minegishi, J Aoyama, HJ Jansen, ...
Gene 511 (2), 195-201, 2012
Correlated substitution analysis and the prediction of amino acid structural contacts
DS Horner, W Pirovano, G Pesole
Briefings in bioinformatics 9 (1), 46-56, 2008
Sequence comparison by sequence harmony identifies subtype-specific functional sites
W Pirovano, KA Feenstra, J Heringa
Nucleic acids research 34 (22), 6540-6548, 2006
The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing
DSJ Groenenberg, W Pirovano, E Gittenberger, M Schilthuizen
BMC genomics 13 (1), 1-11, 2012
Sequence harmony: detecting functional specificity from alignments
KA Feenstra, W Pirovano, K Krab, J Heringa
Nucleic acids research 35 (suppl_2), W495-W498, 2007
Multiple sequence alignment
W Pirovano, J Heringa
Bioinformatics, 143-161, 2008
CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations
BPP van Houte, TW Binsl, H Hettling, W Pirovano, J Heringa
BMC genomics 10 (1), 401, 2009
Bioinformatics approaches for viral metagenomics in plants using short RNAs: model case of study and application to a Cicer arietinum population
W Pirovano, L Miozzi, M Boetzer, V Pantaleo
Frontiers in microbiology 5, 790, 2015
Homeologs of the Nicotiana benthamiana antiviral ARGONAUTE1 show different susceptibilities to microRNA168-mediated control
T Gursinsky, W Pirovano, G Gambino, S Friedrich, SE Behrens, ...
Plant Physiology 168 (3), 938-952, 2015
Genome sequence of EU-unauthorized genetically modified Bacillus subtilis strain 2014-3557 overproducing riboflavin, isolated from a vitamin B2 80% feed additive
E Barbau-Piednoir, SCJ De Keersmaecker, V Wuyts, C Gau, W Pirovano, ...
Genome announcements 3 (2), 2015
SNP genotyping for detecting the ‘rare allele phenomenon’in hybrid zones
Y Lammers, D Kremer, PM Brakefield, DSJ Groenenberg, W Pirovano, ...
Molecular ecology resources 13 (2), 237-242, 2013
The meaning of alignment: lessons from structural diversity
W Pirovano, KA Feenstra, J Heringa
BMC bioinformatics 9 (1), 556, 2008
Multiple sequence alignment
P Bawono, M Dijkstra, W Pirovano, A Feenstra, S Abeln, J Heringa
Bioinformatics, 167-189, 2017
Spread of carbapenem resistance by transposition and conjugation among Pseudomonas aeruginosa
A van der Zee, WB Kraak, A Burggraaf, WHF Goessens, W Pirovano, ...
Frontiers in microbiology 9, 2057, 2018
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