Jörg Fallmann
Jörg Fallmann
Bioinformatics, University of Leipzig
Verified email at - Homepage
Cited by
Cited by
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
AREsite: a database for the comprehensive investigation of AU-rich elements
AR Gruber, J Fallmann, F Kratochvill, P Kovarik, IL Hofacker
Nucleic acids research 39 (suppl_1), D66-D69, 2010
Adipose tissue derived bacteria are associated with inflammation in obesity and type 2 diabetes
L Massier, R Chakaroun, S Tabei, A Crane, KD Didt, J Fallmann, ...
Gut 69 (10), 1796-1806, 2020
Recent advances in RNA folding
J Fallmann, S Will, J Engelhardt, B Grüning, R Backofen, PF Stadler
Journal of biotechnology 261, 97-104, 2017
Tristetraprolin binding site atlas in the macrophage transcriptome reveals a switch for inflammation resolution
V Sedlyarov, J Fallmann, F Ebner, J Huemer, L Sneezum, M Ivin, ...
Molecular systems biology 12 (5), 868, 2016
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements
J Fallmann, V Sedlyarov, A Tanzer, P Kovarik, IL Hofacker
Nucleic acids research 44 (D1), D90-D95, 2016
In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors
FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ...
Genome research 28 (5), 699-713, 2018
Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells
M Hölzer, V Krähling, F Amman, E Barth, SH Bernhart, VAO Carmelo, ...
Scientific reports 6 (1), 34589, 2016
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
BA Grüning, J Fallmann, D Yusuf, S Will, A Erxleben, F Eggenhofer, ...
Nucleic acids research 45 (W1), W560-W566, 2017
Combined experimental and system-level analyses reveal the complex regulatory network of miR-124 during human neurogenesis
LK Kutsche, DM Gysi, J Fallmann, K Lenk, R Petri, A Swiersy, SD Klapper, ...
Cell systems 7 (4), 438-452. e8, 2018
Accurate mapping of tRNA reads
A Hoffmann, J Fallmann, E Vilardo, M Mörl, PF Stadler, F Amman
Bioinformatics 34 (7), 1116-1124, 2018
ViennaNGS: A toolbox for building efficient next-generation sequencing analysis pipelines
MT Wolfinger, J Fallmann, F Eggenhofer, F Amman
F1000Research 4, 2015
RNA-bioinformatics: Tools, services and databases for the analysis of RNA-based regulation
R Backofen, J Engelhardt, A Erxleben, J Fallmann, B Grüning, U Ohler, ...
Journal of biotechnology 261, 76-84, 2017
LOTTE-seq (Long hairpin oligonucleotide based tRNA high-throughput sequencing): Specific selection of tRNAs with 3’-CCA end for high-throughput sequencing
L Erber, A Hoffmann, J Fallmann, H Betat, PF Stadler, M Mörl
RNA biology 17 (1), 23-32, 2020
Alzheimer-related genes show accelerated evolution
A Nitsche, C Arnold, U Ueberham, K Reiche, J Fallmann, J Hackermüller, ...
Molecular psychiatry 26 (10), 5790-5796, 2021
Common features in lncRNA annotation and classification: a survey
C Klapproth, R Sen, PF Stadler, S Findeiß, J Fallmann
Non-coding RNA 7 (4), 77, 2021
Circulating bacterial signature is linked to metabolic disease and shifts with metabolic alleviation after bariatric surgery
RM Chakaroun, L Massier, A Heintz-Buschart, N Said, J Fallmann, ...
Genome medicine 13 (1), 105, 2021
Automatic curation of large comparative animal MicroRNA datasets
AM Yazbeck, PF Stadler, K Tout, J Fallmann
Bioinformatics 35 (22), 4553-4559, 2019
The RNA workbench 2.0: next generation RNA data analysis
J Fallmann, P Videm, A Bagnacani, B Batut, MA Doyle, T Klingstrom, ...
Nucleic acids research 47 (W1), W511-W515, 2019
Intronic tRNAs of mitochondrial origin regulate constitutive and alternative splicing
SM Hoser, A Hoffmann, A Meindl, M Gamper, J Fallmann, SH Bernhart, ...
Genome biology 21 (1), 1-35, 2020
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Articles 1–20