Alexander Schönhuth

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Citations	3529	2343
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Tobias MarschallHeinrich Heine University DüsseldorfVerified email at hhu.de
Alexander SchliepAssociate Professor, Gothenburg UniversityVerified email at schlieplab.org
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Ivan G. CostaProfessor, Institute of Computational Genomics, RWTH AachenVerified email at rwth-aachen.de
Paul I W de BakkerVertex PharmaceuticalsVerified email at vrtx.com
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Laurent FrancioliPostdoctoral researcher, Broad Institute of Harvard and MITVerified email at broadinstitute.org
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Cisca Wijmenga, PhDERC advanced investigator; Professor of Human Genetics, Dept Genetics (MGE), UMCG, Groningen, theVerified email at umcg.nl
Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
Raheleh SalariNatera IncVerified email at natera.com
Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Martin EsterProfessor of Computer Science, Simon Fraser UniversityVerified email at cs.sfu.ca
Fereydoun HormozdiariAssistant Professor at University of California - DavisVerified email at ucdavis.edu
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Aaron R ColakPrincipal ML Scientist, R&D Leader @ QualtricsVerified email at cs.toronto.edu
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn
Victor GuryevVerified email at umcg.nl
Alice Carolyn McHardyHelmholtz Centre for Infection ResearchVerified email at helmholtz-hzi.de
Iman HajirasoulihaAssistant Professor, Weill Cornell Medicine of Cornell University, New York CityVerified email at med.cornell.edu

Alexander Schönhuth

Senior Researcher, Centrum Wiskunde & Informatica, Amsterdam

Verified email at cwi.nl - Homepage

Computational Genomics Data Science Bioinformatics


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Whole-genome sequence variation, population structure and demographic history of the Dutch population LC Francioli, A Menelaou, SL Pulit, F Van Dijk, PF Palamara, CC Elbers, ... Nature genetics 46 (8), 818, 2014	542	2014
Using hidden Markov models to analyze gene expression time course data A Schliep, A Schönhuth, C Steinhoff Bioinformatics 19 (suppl_1), i255-i263, 2003	328	2003
Genome-wide patterns and properties of de novo mutations in humans LC Francioli, PP Polak, A Koren, A Menelaou, S Chun, I Renkens, ... Nature genetics 47 (7), 822-826, 2015	300	2015
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21 (1), 1-35, 2020	189	2020
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	173	2018
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ... Journal of Computational Biology 22 (6), 498-509, 2015	140	2015
ProClust: improved clustering of protein sequences with an extended graph-based approach P Pipenbacher, A Schliep, S Schneckener, A Schönhuth, D Schomburg, ... Bioinformatics 18 (suppl_2), S182-S191, 2002	117	2002
Characteristics of de novo structural changes in the human genome WP Kloosterman, LC Francioli, F Hormozdiari, T Marschall, JY Hehir-Kwa, ... Genome research 25 (6), 792-801, 2015	113	2015
Analyzing gene expression time-courses A Schliep, IG Costa, C Steinhoff, A Schonhuth IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005	98	2005
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’ P Deelen, A Menelaou, EM Van Leeuwen, A Kanterakis, F Van Dijk, ... European Journal of Human Genetics 22 (11), 1321-1326, 2014	96	2014
CLEVER: Clique-Enumerating Variant Finder T Marschall, I Costa, S Canzar, M Bauer, G Klau, A Schliep, A Schönhuth Bioinformatics 28 (22), 2875-2882, 2012	94	2012
Viral quasispecies assembly via maximal clique enumeration. A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel PLoS Computational Biology 10 (3), e1003515, 2014	91	2014
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants JY Hehir-Kwa, T Marschall, WP Kloosterman, LC Francioli, JA Baaijens, ... Nature communications 7 (1), 1-10, 2016	70	2016
Inferring cancer subnetwork markers using density-constrained biclustering P Dao, R Colak, R Salari, F Moser, E Davicioni, A Schönhuth, M Ester Bioinformatics 26 (18), i625-i631, 2010	69	2010
Discovering motifs that induce sequencing errors M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall BMC bioinformatics 14 (5), 1-10, 2013	67	2013
Population-specific genotype imputations using minimac or IMPUTE2 EM Van Leeuwen, A Kanterakis, P Deelen, MV Kattenberg, PE Slagboom, ... Nature protocols 10 (9), 1285-1296, 2015	63	2015
Leveraging distant relatedness to quantify human mutation and gene-conversion rates PF Palamara, LC Francioli, PR Wilton, G Genovese, A Gusev, ... The American Journal of Human Genetics 97 (6), 775-789, 2015	59	2015
De novo assembly of viral quasispecies using overlap graphs JA Baaijens, AZ El Aabidine, E Rivals, A Schönhuth Genome research 27 (5), 835-848, 2017	58	2017
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016	57*	2016
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels T Marschall, I Hajirasouliha, A Schönhuth Bioinformatics 29 (24), 3143-3150, 2013	55	2013

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