Jiří Novák
Jiří Novák
Laboratory of Molecular Structure Characterization, Institute of Microbiology, Academy of Sciences
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Jahr
Characterization of microbial siderophores by mass spectrometry
T Pluháček, K Lemr, D Ghosh, D Milde, J Novák, V Havlíček
Mass Spectrometry Reviews 35 (1), 35-47, 2016
472016
CycloBranch: De Novo Sequencing of Nonribosomal Peptides from Accurate Product Ion Mass Spectra
J Novak, K Lemr, KA Schug, V Havlicek
Journal of The American Society for Mass Spectrometry 26 (10), 1780-1786, 2015
342015
Structural Analysis of Natural Products
J Přichystal, KA Schug, K Lemr, J Novák, V Havlíček
Analytical Chemistry 88 (21), 10338-10346, 2016
282016
Batch-processing of imaging or liquid-chromatography mass spectrometry datasets and De Novo sequencing of polyketide siderophores
J Novák, L Sokolová, K Lemr, T Pluháček, A Palyzová, V Havlíček
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1865 (7), 768-775, 2017
212017
Non-invasive and invasive diagnoses of aspergillosis in a rat model by mass spectrometry
D Luptáková, T Pluháček, M Petřík, J Novák, A Palyzová, L Sokolová, ...
Scientific Reports 7 (1), 16523, 2017
132017
Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry.
J Novák, D Hoksza
DATESO, 1-12, 2010
112010
Cut-Region: A Compact Building Block for Hierarchical Metric Indexing
J Lokoč, P Čech, J Novák, T Skopal
Similarity Search and Applications, 85-100, 2012
102012
Metabolic profiling of Fusarium oxysporum f. sp. conglutinans race 2 in dual cultures with biocontrol agents Bacillus amyloliquefaciens, Pseudomonas aeruginosa, and Trichoderma …
A Palyzová, K Svobodová, L Sokolová, J Novák, Č Novotný
Folia microbiologica 64 (6), 779-787, 2019
92019
Non-metric similarity search of tandem mass spectra including posttranslational modifications
J Novák, T Skopal, D Hoksza, J Lokoč
Journal of Discrete Algorithms 13, 19-31, 2012
82012
CycloBranch: An open tool for fine isotope structures in conventional and product ion mass spectra
J Novák, A Škríba, J Zápal, M Kuzma, V Havlíček
Journal of Mass Spectrometry 53 (11), 1097-1103, 2018
52018
Improving the similarity search of tandem mass spectra using metric access methods
J Novák, T Skopal, D Hoksza, J Lokoč
Proceedings of the Third International Conference on SImilarity Search and …, 2010
52010
CycloBranch 2: Molecular Formula Annotations Applied to imzML Data Sets in Bimodal Fusion and LC-MS Data Files
J Novák, A Škríba, V Havlíček
Analytical Chemistry 92 (10), 6844-6849, 2020
32020
Analysis of Microbial Siderophores by Mass Spectrometry
T Pluhacek, A Skriba, J Novak, D Luptakova, V Havlicek
Metabolomics, 131-153, 2019
32019
On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications
J Novák, T Sachsenberg, D Hoksza, T Skopal, O Kohlbacher
Journal of Integrative Bioinformatics 10 (3), 228, 2013
32013
Effect of the anti-inflammatory drug diclofenac on lipid composition of bacterial strain Raoultella sp. KDF8
A Palyzová, H Marešová, J Novák, J Zahradník, T Řezanka
Folia Microbiologica, 1-11, 2020
22020
A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools
J Novák, T Sachsenberg, D Hoksza, T Skopal, O Kohlbacher
7th International Conference on Practical Applications of Computational …, 2013
22013
On optimizing the non-metric similarity search in tandem mass spectra by clustering
J Novák, D Hoksza, J Lokoč, T Skopal
Bioinformatics Research and Applications, 189-200, 2012
22012
Základy interpretace hmotnostních spekter
L Škultéty, J Novák, V Havlíček
Chemické listy 114 (2), 145-154, 2020
12020
Similarity Search in Mass Spectra Databases
J Novak
Doctoral Thesis, 2013
12013
An application of the metric access methods to the mass spectrometry data
J Novák, D Hoksza
Computational Intelligence in Bioinformatics and Computational Biology, 2009 …, 2009
12009
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