Jean-Philippe Vert

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laurent jacobCNRS, Université Lyon 1Verified email at univ-lyon1.fr
Francis BachInria - Ecole Normale SupérieureVerified email at inria.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Tatsuya AkutsuProfessor, Bioinformatics Center, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; Professor at ETH Zürich, and DistinguishedVerified email at tuebingen.mpg.de
Nelle VaroquauxCNRS, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Marco CuturiApple / CREST-ENSAE.Verified email at apple.com
Pierre MahébioMérieuxVerified email at biomerieux.com
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Andrei ZinovyevScientific coordinator of cancer systems biology, Institut Curie, PRAIRIE chairVerified email at curie.fr
kevin bleakleyINRIA, FranceVerified email at inria.fr
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Yoshihiro YamanishiKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Mikhail ZaslavskiyVerified email at ensmp.fr
Sandrine DudoitDivision of Biostatistics and Department of Statistics, University of California, BerkeleyVerified email at stat.berkeley.edu
Fanny PerraudeauVerified email at pendulum.co
G StolovitzkyChief Science Officer, Sema4Verified email at sema4.com
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch

Jean-Philippe Vert

Google Brain / Mines ParisTech

Verified email at mines-paristech.fr - Homepage

machine learning computational biology statistics bioinformatics artificial intelligence


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1533	2012
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ... Genome biology 16 (1), 1-11, 2015	1114	2015
Group lasso with overlap and graph lasso L Jacob, G Obozinski, JP Vert Proceedings of the 26th annual international conference on machine learning …, 2009	1051	2009
Kernel methods in computational biology B Schölkopf, K Tsuda, JPV Vert MIT press, 2004	964	2004
A community effort to assess and improve drug sensitivity prediction algorithms Nature Biotechnology 32, 1202-1212, 2014	625	2014
Clustered multitask learning: A convex relaxation L Jacob, F Bach, JP Vert Advances in Neural Information Processing Systems 21, 2009	511*	2009
A primer on kernel methods JP Vert, K Tsuda, B Schölkopf Kernel Methods in Computational Biology, 35-70, 2004	503	2004
Protein homology detection using string alignment kernels H Saigo, JP Vert, N Ueda, T Akutsu Bioinformatics 20 (11), 1682-1689, 2004	482	2004
Consistency of random forests E Scornet, G Biau, JP Vert Annals of Statistics 43 (4), 1716-1741, 2015	446	2015
A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 1-17, 2018	439	2018
A path following algorithm for the graph matching problem M Zaslavskiy, F Bach, JP Vert IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008	413	2008
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures AC Haury, P Gestraud, JP Vert PloS one 6 (12), e28210, 2011	406	2011
TIGRESS: trustful inference of gene regulation using stability selection AC Haury, F Mordelet, P Vera-Licona, JP Vert BMC systems biology 6 (1), 1-17, 2012	372	2012
Protein-ligand interaction prediction: an improved chemogenomics approach L Jacob, JP Vert bioinformatics 24 (19), 2149-2156, 2008	369	2008
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8 (1), 1-15, 2007	314	2007
An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7 (1), 1-17, 2006	302	2006
Protein network inference from multiple genomic data: a supervised approach Y Yamanishi, JP Vert, M Kanehisa Bioinformatics 20 (suppl_1), i363-i370, 2004	299	2004
A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization. J Abernethy, F Bach, T Evgeniou, JP Vert Journal of Machine Learning Research 10 (3), 2009	293	2009
Graph kernels based on tree patterns for molecules P Mahé, JP Vert Machine learning 75 (1), 3-35, 2009	289	2009
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ... Bioinformatics 27 (2), 268-269, 2011	285	2011

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