Giovanni Bussotti
Giovanni Bussotti
Research engineer at Institut Pasteur
Verified email at pasteur.fr
Title
Cited by
Cited by
Year
An Integrated Encyclopedia of DNA Elements in the Human Genome
J Khatun
Nature, 2012
10989*2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
35702012
Long noncoding RNAs with enhancer-like function in human cells
UA Ørom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ...
Cell 143 (1), 46-58, 2010
16122010
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
12222014
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis
S Ounzain, R Micheletti, C Arnan, I Plaisance, D Cecchi, B Schroen, ...
Journal of molecular and cellular cardiology 89, 98-112, 2015
1392015
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
MB Clark, TR Mercer, G Bussotti, T Leonardi, KR Haynes, J Crawford, ...
Nature methods 12 (4), 339-342, 2015
1152015
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Nature protocols 6 (11), 1669-1682, 2011
992011
Exploring the gonad transcriptome of two extreme male pigs with RNA-seq
A Esteve-Codina, R Kofler, N Palmieri, G Bussotti, C Notredame, ...
BMC genomics 12 (1), 552, 2011
972011
Multiple sequence alignment modeling: methods and applications
M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ...
Briefings in bioinformatics 17 (6), 1009-1023, 2016
892016
Modulation of aneuploidy in Leishmania donovani during adaptation to different in vitro and in vivo environments and its impact on gene expression
F Dumetz, H Imamura, M Sanders, V Seblova, J Myskova, P Pescher, ...
MBio 8 (3), 2017
712017
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 1-11, 2015
582015
T-Coffee: tree-based consistency objective function for alignment evaluation
C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Multiple Sequence Alignment Methods, 117-129, 2014
512014
Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani
PP Barja, P Pescher, G Bussotti, F Dumetz, H Imamura, D Kedra, ...
Nature ecology & evolution 1 (12), 1961-1969, 2017
482017
BlastR—fast and accurate database searches for non-coding RNAs
G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ...
Nucleic acids research 39 (16), 6886-6895, 2011
332011
Leishmania genome dynamics during environmental adaptation reveal strain-specific differences in gene copy number variation, karyotype instability, and telomeric amplification
G Bussotti, E Gouzelou, MC Boité, I Kherachi, Z Harrat, N Eddaikra, ...
MBio 9 (6), 2018
302018
Intron retention-dependent gene regulation in Cryptococcus neoformans
S Gonzalez-Hilarion, D Paulet, KT Lee, CC Hon, P Lechat, E Mogensen, ...
Scientific reports 6 (1), 1-13, 2016
302016
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package
C Kemena, G Bussotti, E Capriotti, MA Marti-Renom, C Notredame
Bioinformatics 29 (9), 1112-1119, 2013
252013
A novel, noncanonical mechanism of cytoplasmic polyadenylation operates in Drosophila embryogenesis
O Coll, A Villalba, G Bussotti, C Notredame, F Gebauer
Genes & development 24 (2), 129-134, 2010
252010
Detecting and comparing non-coding RNAs in the high-throughput era
G Bussotti, C Notredame, AJ Enright
International journal of molecular sciences 14 (8), 15423-15458, 2013
232013
Use of ChIP-Seq data for the design of a multiple promoter-alignment method
I Erb, JR Gonzalez-Vallinas, G Bussotti, E Blanco, E Eyras, C Notredame
Nucleic acids research 40 (7), e52-e52, 2012
222012
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