| EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation JS Pearson, C Giogha, S Mühlen, U Nachbur, CLL Pham, Y Zhang, ... Nature microbiology 2 (4), 1-10, 2017 | 102 | 2017 |
| Are Escherichia coli pathotypes still relevant in the era of whole-genome sequencing? RM Robins-Browne, KE Holt, DJ Ingle, DM Hocking, J Yang, M Tauschek Frontiers in Cellular and Infection Microbiology 6, 141, 2016 | 97 | 2016 |
| In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O: H serotype combinations within and between pathogenic lineages DJ Ingle, M Valcanis, A Kuzevski, M Tauschek, M Inouye, T Stinear, ... Microbial Genomics 2 (7), 2016 | 75 | 2016 |
| Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants DJ Ingle, M Tauschek, DJ Edwards, DM Hocking, DJ Pickard, ... Nature microbiology 1 (2), 1-9, 2016 | 64 | 2016 |
| Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp DJ Ingle, O Clermont, D Skurnik, E Denamur, ST Walk, DM Gordon Applied and environmental microbiology 77 (8), 2695-2700, 2011 | 58 | 2011 |
| Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ... Microbial genomics 2 (3), 2016 | 45 | 2016 |
| Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia DJ Ingle, M Easton, M Valcanis, T Seemann, JC Kwong, N Stephens, ... Clinical Infectious Diseases 69 (9), 1535-1544, 2019 | 42 | 2019 |
| Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era DA Williamson, EPF Chow, CL Gorrie, T Seemann, DJ Ingle, N Higgins, ... Nature communications 10 (1), 1-10, 2019 | 41 | 2019 |
| Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa DJ Ingle, MM Levine, KL Kotloff, KE Holt, RM Robins-Browne Nature microbiology 3 (9), 1063-1073, 2018 | 36 | 2018 |
| Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers DJ Ingle, S Nair, H Hartman, PM Ashton, ZA Dyson, M Day, J Freedman, ... PLOS Neglected Tropical Diseases 13 (9), 2019 | 28 | 2019 |
| Extensively drug-resistant Shigellosis in Australia among men who have sex with men D Williamson, D Ingle, B Howden New England Journal of Medicine 381 (25), 2477-2479, 2019 | 17 | 2019 |
| Genomic analysis of fluoroquinolone-and tetracycline-resistant Campylobacter jejuni Sequence Type 6964 in humans and poultry, New Zealand, 2014–2016 NP French, J Zhang, GP Carter, AC Midwinter, PJ Biggs, K Dyet, BJ Gilpin, ... Emerging infectious diseases 25 (12), 2226, 2019 | 12 | 2019 |
| Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia DJ Ingle, AG da Silva, M Valcanis, SA Ballard, T Seemann, AV Jennison, ... Microbial genomics 5 (5), 2019 | 5 | 2019 |
| Risk factors for asymptomatic enteric pathogen detection among men who have sex with men DA Williamson, EPF Chow, D Lee, K Maddaford, M Sait, M Easton, ... Open forum infectious diseases 6 (9), ofz326, 2019 | 3 | 2019 |
| Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei J Hawkey, K Paranagama, KS Baker, RJ Bengtsson, FX Weill, ... Nature communications 12 (1), 1-12, 2021 | 2 | 2021 |
| Development of phylodynamic methods for bacterial pathogens DJ Ingle, BP Howden, S Duchene Trends in Microbiology, 2021 | 2 | 2021 |
| GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure Y Wan, RR Wick, J Zobel, DJ Ingle, M Inouye, KE Holt BMC Genomics 21, 2020 | 2 | 2020 |
| Systematic analysis of key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria CL Gorrie, AG Da Silva, DJ Ingle, C Higgs, T Seeman, TP Stinear, ... bioRxiv, 2020 | 2 | 2020 |
| Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring blaCTX-M-27 in Victoria, Australia DJ Ingle, P Andersson, M Valcanis, J Barnden, AG da Silva, KA Horan, ... Antimicrobial Agents and Chemotherapy 64 (12), e01518-20, 2020 | 1 | 2020 |
| Genomic assessment of within-host population variation in Neisseria gonorrhoeae: Implications for gonorrhoea transmission MM Ashcroft, EPF Chow, DYJ Lee, V De Petra, M Soumilas, M Tschaepe, ... medRxiv, 2020 | 1 | 2020 |
Kathryn HoltMonash University & LSHTMVerified email at lshtm.ac.uk
