| The phosphate binder ferric citrate alters the gut microbiome in rats with chronic kidney disease WL Lau, ND Vaziri, ACF Nunes, AM Comeau, MGI Langille, W England, ... Journal of Pharmacology and Experimental Therapeutics 367 (3), 452-460, 2018 | 43 | 2018 |
| Diverse genetic architectures lead to the same cryptic phenotype in a yeast cross MB Taylor, J Phan, JT Lee, M McCadden, IM Ehrenreich Nature Communications 7 (1), 1-6, 2016 | 38 | 2016 |
| Stable isotope profiles reveal active production of VOCs from human-associated microbes J Phan, S Meinardi, B Barletta, DR Blake, K Whiteson Journal of breath research 11 (1), 017101, 2017 | 31 | 2017 |
| Lumacaftor/ivacaftor changes the lung microbiome and metabolome in cystic fibrosis patients AH Neerincx, K Whiteson, JL Phan, P Brinkman, MI Abdel-Aziz, ... ERJ open research 7 (2), 2021 | 29 | 2021 |
| Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa J Phan, T Gallagher, A Oliver, WE England, K Whiteson FEMS microbiology letters 365 (10), fny082, 2018 | 26 | 2018 |
| Longitudinal associations of the cystic fibrosis airway microbiome and volatile metabolites: a case study A Hahn, K Whiteson, TJ Davis, J Phan, I Sami, AC Koumbourlis, ... Frontiers in Cellular and Infection Microbiology 10, 174, 2020 | 25 | 2020 |
| Regulatory rewiring in a cross causes extensive genetic heterogeneity T Matsui, R Linder, J Phan, F Seidl, IM Ehrenreich Genetics 201 (2), 769-777, 2015 | 23 | 2015 |
| Cystic fibrosis-associated Stenotrophomonas maltophilia strain-specific adaptations and responses to pH T Gallagher, J Phan, A Oliver, AB Chase, WE England, S Wandro, ... Journal of bacteriology 201 (7), 10.1128/jb. 00478-18, 2019 | 14 | 2019 |
| Alterations in gut microbiome composition and function in irritable bowel syndrome and increased probiotic abundance with daily supplementation J Phan, D Nair, S Jain, T Montagne, DV Flores, A Nguyen, S Dietsche, ... Msystems 6 (6), e01215-21, 2021 | 12 | 2021 |
| Getting our fingers on the pulse of slow-growing bacteria in hard-to-reach places T Gallagher, J Phan, K Whiteson Journal of bacteriology 200 (24), 10.1128/jb. 00540-18, 2018 | 8 | 2018 |
| Stable isotope profiles reveal active production of VOCs from humanassociated microbes. J Breath Res 11: 017101 J Phan, S Meinardi, B Barletta, DR Blake, K Whiteson | 8 | 2017 |
| Liquid chromatography mass spectrometry detection of antibiotic agents in sputum from persons with cystic fibrosis T Gallagher, S Riedel, J Kapcia, LJ Caverly, L Carmody, LM Kalikin, J Lu, ... Antimicrobial agents and chemotherapy 65 (2), 10.1128/aac. 00927-20, 2021 | 7 | 2021 |
| Thriving Under Stress: Pseudomonas aeruginosa Outcompetes the Background Polymicrobial Community Under Treatment Conditions in a Novel Chronic Wound … J Phan, S Ranjbar, M Kagawa, M Gargus, AI Hochbaum, KL Whiteson Frontiers in Cellular and Infection Microbiology 10, 569685, 2020 | 6 | 2020 |
| Capturing Actively Produced Microbial Volatile Organic Compounds from Human-Associated Samples with Vacuum-Assisted Sorbent Extraction J Phan, J Kapcia III, CI Rodriguez, VL Vogel, DB Cardin, SJB Dunham, ... JoVE (Journal of Visualized Experiments), e62547, 2022 | 3 | 2022 |
| Precision synbiotics increase gut microbiome diversity and improve gastrointestinal symptoms in a pilot open-label study for autism spectrum disorder J Phan, DC Calvo, D Nair, S Jain, T Montagne, S Dietsche, K Blanchard, ... Msystems, e00503-24, 2024 | 2 | 2024 |
| Ivacaftor/lumacaftor changes the lung microbiome and metabolome in cystic fibrosis patients AH Neerincx, K Whiteson, JL Phan, P Brinkman, MI Abdel-Aziz, ... European Respiratory Journal 56 (suppl 64), 2020 | 2 | 2020 |
| Metabolic indicators of microbial colonization and disease progression in cystic fibrosis J Phan University of California, Irvine, 2021 | | 2021 |
| THE CYSTIC FIBROSIS LUNG METABOLOME IS INDIVIDUALIZED AND STABLE DURING PERIODS OF BASELINE HEALTH J Rothman, J Phan, T Gallagher, LA Carmody, LM Kalikin, LJ Caverly, ... PEDIATRIC PULMONOLOGY 55, S144-S145, 2020 | | 2020 |
| P207 Start of lumacaftor/ivacaftor in adult cystic fibrosis patients with homozygous F508del results in temporal and moderate changes in lung microbiome and metabolome AH Neerincx, K Whiteson, JL Phan, P Brinkman, MI Abdel-Aziz, ... Journal of Cystic Fibrosis 19, S115, 2020 | | 2020 |
| LONGITUDINAL INSIGHT INTO MICROBIAL COMMUNITY METABOLISM AND COMPOSITION IN CYSTIC FIBROSIS SPUTUM J Phan, T Gallagher, J Kapcia, LA Carmody, LM Kalikin, J Lu, LJ Caverly, ... PEDIATRIC PULMONOLOGY 54, S282-S282, 2019 | | 2019 |
