Brent S Pedersen
Brent S Pedersen
University of Utah, Human Genetics
Verified email at genetics.utah.edu - Homepage
Title
Cited by
Cited by
Year
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338-345, 2018
11112018
Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis
TE Fingerlin, E Murphy, W Zhang, AL Peljto, KK Brown, MP Steele, ...
Nature genetics 45 (6), 613-620, 2013
5692013
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
BC Thomas, B Pedersen, M Freeling
Genome research 16 (7), 934-946, 2006
4072006
Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids
E Lyons, B Pedersen, J Kane, M Alam, R Ming, H Tang, X Wang, ...
Plant physiology 148 (4), 1772-1781, 2008
3562008
GOATOOLS: A Python library for Gene Ontology analyses
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ...
Scientific reports 8 (1), 1-17, 2018
2832018
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
RK Dale, BS Pedersen, AR Quinlan
Bioinformatics 27 (24), 3423-3424, 2011
2562011
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homeologs
MR Woodhouse, JC Schnable, BS Pedersen, E Lyons, D Lisch, ...
PLoS biology 8 (6), e1000409, 2010
2462010
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values
BS Pedersen, DA Schwartz, IV Yang, KJ Kechris
Bioinformatics 28 (22), 2986-2988, 2012
2452012
The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids
E Lyons, B Pedersen, J Kane, M Freeling
Tropical Plant Biology 1 (3), 181-190, 2008
1972008
Mosdepth: quick coverage calculation for genomes and exomes
BS Pedersen, AR Quinlan
Bioinformatics 34 (5), 867-868, 2018
1912018
DNA methylation and childhood asthma in the inner city
IV Yang, BS Pedersen, A Liu, GT O'Connor, SJ Teach, M Kattan, ...
Journal of Allergy and Clinical Immunology 136 (1), 69-80, 2015
1802015
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
M Freeling, E Lyons, B Pedersen, M Alam, R Ming, D Lisch
Genome research 18 (12), 1924-1937, 2008
1572008
Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy
H Tang, MR Woodhouse, F Cheng, JC Schnable, BS Pedersen, G Conant, ...
Genetics 190 (4), 1563-1574, 2012
1492012
Large-Scale Management of Insect Resistance to Transgenic Cotton in Arizona-Can Transgenic Insecticidal Crops be Sustained?
Y Carrière, TJ Dennehy, B Pedersen, S Haller, C Ellers-Kirk, L Antilla, ...
Journal of Economic Entomology 94 (2), 315-325, 2001
1292001
Relationship of DNA methylation and gene expression in idiopathic pulmonary fibrosis
IV Yang, BS Pedersen, E Rabinovich, CE Hennessy, EJ Davidson, ...
American journal of respiratory and critical care medicine 190 (11), 1263-1272, 2014
1202014
Screening synteny blocks in pairwise genome comparisons through integer programming
H Tang, E Lyons, B Pedersen, JC Schnable, AH Paterson, M Freeling
BMC bioinformatics 12 (1), 1-11, 2011
1182011
A map of constrained coding regions in the human genome
JM Havrilla, BS Pedersen, RM Layer, AR Quinlan
Nature genetics 51 (1), 88-95, 2019
1092019
Fast and accurate alignment of long bisulfite-seq reads
BS Pedersen, K Eyring, S De, IV Yang, DA Schwartz
arXiv preprint arXiv:1401.1129, 2014
942014
BioStar: an online question & answer resource for the bioinformatics community
LD Parnell, P Lindenbaum, K Shameer, GM Dall'Olio, DC Swan, ...
PLoS computational biology 7 (10), e1002216, 2011
942011
Vcfanno: fast, flexible annotation of genetic variants
BS Pedersen, RM Layer, AR Quinlan
Genome biology 17 (1), 1-9, 2016
932016
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Articles 1–20