Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 3695 | 2015 |
Human body epigenome maps reveal noncanonical DNA methylation variation MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ... Nature 523 (7559), 212-216, 2015 | 428 | 2015 |
Epigenomic diversity in a global collection of Arabidopsis thaliana accessions T Kawakatsu, SC Huang, F Jupe, E Sasaki, RJ Schmitz, MA Urich, ... Cell 166 (2), 492-505, 2016 | 326 | 2016 |
Abnormalities in human pluripotent cells due to reprogramming mechanisms H Ma, R Morey, RC O'Neil, Y He, B Daughtry, MD Schultz, M Hariharan, ... Nature 511 (7508), 177-183, 2014 | 301 | 2014 |
Molecular criteria for defining the naive human pluripotent state TW Theunissen, M Friedli, Y He, E Planet, RC O’Neil, S Markoulaki, ... Cell stem cell 19 (4), 502-515, 2016 | 275 | 2016 |
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ... Science 357 (6351), 600-604, 2017 | 218 | 2017 |
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ... Genome research 23 (10), 1663-1674, 2013 | 211 | 2013 |
An alternative pluripotent state confers interspecies chimaeric competency J Wu, D Okamura, M Li, K Suzuki, C Luo, L Ma, Y He, Z Li, C Benner, ... Nature 521 (7552), 316-321, 2015 | 177 | 2015 |
Characterization of Greater Middle Eastern genetic variation for enhanced disease gene discovery EM Scott, A Halees, Y Itan, EG Spencer, Y He, MA Azab, SB Gabriel, ... Nature genetics 48 (9), 1071-1076, 2016 | 170 | 2016 |
Non-CG methylation in the human genome Y He, JR Ecker Annual review of genomics and human genetics 16, 55-77, 2015 | 139 | 2015 |
The developmental potential of iPSCs is greatly influenced by reprogramming factor selection Y Buganim, S Markoulaki, N van Wietmarschen, H Hoke, T Wu, K Ganz, ... Cell stem cell 15 (3), 295-309, 2014 | 131 | 2014 |
Proteogenomic database construction driven from large scale RNA-seq data S Woo, SW Cha, G Merrihew, Y He, N Castellana, C Guest, M MacCoss, ... Journal of proteome research 13 (1), 21-28, 2014 | 108 | 2014 |
An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays NE Castellana, Z Shen, Y He, JW Walley, SP Briggs, V Bafna Molecular & Cellular Proteomics 13 (1), 157-167, 2014 | 76 | 2014 |
Improved regulatory element prediction based on tissue-specific local epigenomic signatures Y He, DU Gorkin, DE Dickel, JR Nery, RG Castanon, AY Lee, Y Shen, ... Proceedings of the National Academy of Sciences 114 (9), E1633-E1640, 2017 | 59 | 2017 |
Functional human oocytes generated by transfer of polar body genomes H Ma, RC O’Neil, NM Gutierrez, M Hariharan, ZZ Zhang, Y He, ... Cell stem cell 20 (1), 112-119, 2017 | 52 | 2017 |
Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 48 | 2020 |
An atlas of dynamic chromatin landscapes in mouse fetal development DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ... Nature 583 (7818), 744-751, 2020 | 25* | 2020 |
Spatiotemporal DNA methylome dynamics of the developing mouse fetus Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo, RG Castanon, JR Nery, ... Nature 583 (7818), 752-759, 2020 | 18* | 2020 |
Epigenetic silencing of a multifunctional plant stress regulator M Zander, BC Willige, Y He, TA Nguyen, AE Langford, R Nehring, ... Elife 8, e47835, 2019 | 7 | 2019 |
MOST+: A de novo motif finding approach combining genomic sequence and heterogeneous genome-wide signatures Y Zhang, Y He, G Zheng, C Wei BMC genomics 16 (S7), S13, 2015 | 7 | 2015 |