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Anna Kreshuk
Anna Kreshuk
Group Leader, EMBL Heidelberg
Bestätigte E-Mail-Adresse bei embl.de
Titel
Zitiert von
Zitiert von
Jahr
Ilastik: interactive machine learning for (bio) image analysis
S Berg, D Kutra, T Kroeger, CN Straehle, BX Kausler, C Haubold, ...
Nature Methods 16 (12), 1226-1232, 2019
20352019
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 180 (12), 2499-2512, 2009
9972009
Accurate and versatile 3D segmentation of plant tissues at cellular resolution
A Wolny, L Cerrone, A Vijayan, R Tofanelli, AV Barro, M Louveaux, ...
Elife 9, e57613, 2020
2372020
ROOT—A C++ framework for petabyte data storage, statistical analysis and visualization
I Antcheva, M Ballintijn, B Bellenot, M Biskup, R Brun, N Buncic, P Canal, ...
Computer Physics Communications 182 (6), 1384-1385, 2011
2082011
Common limitations of image processing metrics: A picture story
A Reinke, MD Tizabi, CH Sudre, M Eisenmann, T Rädsch, M Baumgartner, ...
arXiv preprint arXiv:2104.05642, 2021
2072021
Deep learning enables fast and dense single-molecule localization with high accuracy
A Speiser, LR Müller, P Hoess, U Matti, CJ Obara, WR Legant, A Kreshuk, ...
Nature methods 18 (9), 1082-1090, 2021
2062021
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
JM Musser, KJ Schippers, M Nickel, G Mizzon, AB Kohn, C Pape, ...
Science 374 (6568), 717-723, 2021
1972021
Metrics reloaded: recommendations for image analysis validation
L Maier-Hein, A Reinke, P Godau, MD Tizabi, F Buettner, E Christodoulou, ...
Nature methods 21 (2), 195-212, 2024
1842024
Multicut brings automated neurite segmentation closer to human performance
T Beier, C Pape, N Rahaman, T Prange, S Berg, DD Bock, A Cardona, ...
Nature Methods 14 (2), 2017
1802017
Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images
A Kreshuk, CN Straehle, C Sommer, U Koethe, M Cantoni, G Knott, ...
PloS one 6 (10), e24899, 2011
1662011
Volume electron microscopy
CJ Peddie, C Genoud, A Kreshuk, K Meechan, KD Micheva, K Narayan, ...
Nature Reviews Methods Primers 2 (1), 51, 2022
1462022
Metrics reloaded: Pitfalls and recommendations for image analysis validation
L Maier-Hein, A Reinke, E Christodoulou, B Glocker, P Godau, F Isensee, ...
arXiv preprint arXiv:2206.01653, 2022
1282022
Three‐dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues
C Calì, J Baghabra, DJ Boges, GR Holst, A Kreshuk, FA Hamprecht, ...
Journal of Comparative Neurology 524 (1), 23-38, 2016
1162016
Deep learning-enhanced light-field imaging with continuous validation
N Wagner, F Beuttenmueller, N Norlin, J Gierten, JC Boffi, J Wittbrodt, ...
Nature Methods 18 (5), 557-563, 2021
1042021
Whole-body integration of gene expression and single-cell morphology
HM Vergara, C Pape, KI Meechan, V Zinchenko, C Genoud, AA Wanner, ...
Cell 184 (18), 4819-4837. e22, 2021
982021
The Mutex Watershed: Efficient, Parameter-Free Image Partitioning
S Wolf, C Pape, A Bailoni, N Rahaman, A Kreshuk, U Köthe, ...
Proceedings of the European Conference on Computer Vision (ECCV), 546-562, 2018
932018
Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons
B Maco, A Holtmaat, M Cantoni, A Kreshuk, CN Straehle, FA Hamprecht, ...
PloS one 8 (2), e57405, 2013
932013
Understanding metric-related pitfalls in image analysis validation
A Reinke, MD Tizabi, M Baumgartner, M Eisenmann, D Heckmann-Nötzel, ...
arXiv preprint arXiv:2302.01790, 2023
912023
Convolutional networks for supervised mining of molecular patterns within cellular context
I de Teresa-Trueba, SK Goetz, A Mattausch, F Stojanovska, CE Zimmerli, ...
Nature Methods 20 (2), 284-294, 2023
862023
QUINT: workflow for quantification and spatial analysis of features in histological images from rodent brain
SC Yates, NE Groeneboom, C Coello, SF Lichtenthaler, PH Kuhn, ...
Frontiers in Neuroinformatics 13, 75, 2019
832019
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