| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 115 | 2019 |
| Protein docking model evaluation by 3D deep convolutional neural networks X Wang, G Terashi, CW Christoffer, M Zhu, D Kihara Bioinformatics 36 (7), 2113-2118, 2020 | 87 | 2020 |
| In silico structure-based approaches to discover protein-protein interaction-targeting drugs WH Shin, CW Christoffer, D Kihara Methods 131, 22-32, 2017 | 80 | 2017 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 78 | 2021 |
| Modeling disordered protein interactions from biophysical principles LX Peterson, A Roy, C Christoffer, G Terashi, D Kihara PLoS computational biology 13 (4), e1005485, 2017 | 51 | 2017 |
| LZerD webserver for pairwise and multiple protein–protein docking C Christoffer, S Chen, V Bharadwaj, T Aderinwale, V Kumar, M Hormati, ... Nucleic Acids Research 49 (W1), W359-W365, 2021 | 48 | 2021 |
| Real-time structure search and structure classification for AlphaFold protein models T Aderinwale, V Bharadwaj, C Christoffer, G Terashi, Z Zhang, ... Communications biology 5 (1), 316, 2022 | 39 | 2022 |
| Modeling the assembly order of multimeric heteroprotein complexes LX Peterson, Y Togawa, J Esquivel-Rodriguez, G Terashi, C Christoffer, ... PLoS computational biology 14 (1), e1005937, 2018 | 33 | 2018 |
| PL-PatchSurfer2: improved local surface matching-based virtual screening method that is tolerant to target and ligand structure variation WH Shin, CW Christoffer, J Wang, D Kihara Journal of chemical information and modeling 56 (9), 1676-1691, 2016 | 29 | 2016 |
| LZerD Protein-Protein Docking Webserver Enhanced With de novo Structure Prediction C Christoffer, V Bharadwaj, R Luu, D Kihara Frontiers in molecular biosciences 8, 724947, 2021 | 28 | 2021 |
| A global map of the protein shape universe X Han, A Sit, C Christoffer, S Chen, D Kihara PLoS computational biology 15 (4), e1006969, 2019 | 27 | 2019 |
| Navigating 3D electron microscopy maps with EM-SURFER J Esquivel-Rodríguez, Y Xiong, X Han, S Guang, C Christoffer, D Kihara BMC bioinformatics 16, 1-9, 2015 | 25 | 2015 |
| Computational structure modeling for diverse categories of macromolecular interactions T Aderinwale, CW Christoffer, D Sarkar, E Alnabati, D Kihara Current opinion in structural biology 64, 1-8, 2020 | 23 | 2020 |
| Analyzing effect of quadruple multiple sequence alignments on deep learning based protein inter-residue distance prediction A Jain, G Terashi, Y Kagaya, SR Maddhuri Venkata Subramaniya, ... Scientific Reports 11 (1), 7574, 2021 | 21 | 2021 |
| SHREC 2020: Multi-domain protein shape retrieval challenge F Langenfeld, Y Peng, YK Lai, PL Rosin, T Aderinwale, G Terashi, ... Computers & Graphics 91, 189-198, 2020 | 19 | 2020 |
| Kinetic and structural parameters governing Fic-mediated adenylylation/AMPylation of the Hsp70 chaperone, BiP/GRP78 A Sanyal, EA Zbornik, BG Watson, C Christoffer, J Ma, D Kihara, S Mattoo Cell Stress and Chaperones 26 (4), 639-656, 2021 | 17 | 2021 |
| VESPER: global and local cryo-EM map alignment using local density vectors X Han, G Terashi, C Christoffer, S Chen, D Kihara Nature communications 12 (1), 2090, 2021 | 17 | 2021 |
| SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties A Raffo, U Fugacci, S Biasotti, W Rocchia, Y Liu, E Otu, R Zwiggelaar, ... Computers & Graphics 99, 1-21, 2021 | 14 | 2021 |
| Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38‐46 C Christoffer, G Terashi, WH Shin, T Aderinwale, ... Proteins: Structure, Function, and Bioinformatics 88 (8), 948-961, 2020 | 14 | 2020 |
| SHREC 2022: protein–ligand binding site recognition L Gagliardi, A Raffo, U Fugacci, S Biasotti, W Rocchia, H Huang, BB Amor, ... Computers & Graphics 107, 20-31, 2022 | 13 | 2022 |
