| Effects of cigarette smoke on the human airway epithelial cell transcriptome A Spira, J Beane, V Shah, G Liu, F Schembri, X Yang, J Palma, JS Brody Proceedings of the National Academy of Sciences 101 (27), 10143-10148, 2004 | 742 | 2004 |
| Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer A Spira, JE Beane, V Shah, K Steiling, G Liu, F Schembri, S Gilman, ... Nature medicine 13 (3), 361-366, 2007 | 681 | 2007 |
| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 388 | 2020 |
| Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression J Beane, P Sebastiani, G Liu, JS Brody, ME Lenburg, A Spira Genome biology 8, 1-17, 2007 | 273 | 2007 |
| RNAi targeting of West Nile virus in mosquito midguts promotes virus diversification DE Brackney, JE Beane, GD Ebel PLoS pathogens 5 (7), e1000502, 2009 | 254 | 2009 |
| Immune evasion before tumour invasion in early lung squamous carcinogenesis C Mascaux, M Angelova, A Vasaturo, J Beane, K Hijazi, G Anthoine, ... Nature 571 (7766), 570-575, 2019 | 250 | 2019 |
| The SERPINE2 gene is associated with chronic obstructive pulmonary disease DL DeMeo, TJ Mariani, C Lange, S Srisuma, AA Litonjua, JC Celedón, ... The American Journal of Human Genetics 78 (2), 253-264, 2006 | 249 | 2006 |
| Gene expression profiling of human lung tissue from smokers with severe emphysema A Spira, J Beane, V Pinto-Plata, A Kadar, G Liu, V Shah, B Celli, JS Brody American journal of respiratory cell and molecular biology 31 (6), 601-610, 2004 | 216 | 2004 |
| Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions VH Teixeira, CP Pipinikas, A Pennycuick, H Lee-Six, D Chandrasekharan, ... Nature medicine 25 (3), 517-525, 2019 | 203 | 2019 |
| Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq J Beane, J Vick, F Schembri, C Anderlind, A Gower, J Campbell, L Luo, ... Cancer prevention research 4 (6), 803-817, 2011 | 190 | 2011 |
| A prediction model for lung cancer diagnosis that integrates genomic and clinical features J Beane, P Sebastiani, TH Whitfield, K Steiling, YM Dumas, ME Lenburg, ... Cancer Prevention Research 1 (1), 56-64, 2008 | 136 | 2008 |
| Integrated genomics reveals convergent transcriptomic networks underlying chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis RL Kusko, JF Brothers, J Tedrow, K Pandit, L Huleihel, C Perdomo, G Liu, ... American journal of respiratory and critical care medicine 194 (8), 948-960, 2016 | 120 | 2016 |
| The case for a pre-cancer genome atlas (PCGA) JD Campbell, SA Mazzilli, ME Reid, SS Dhillon, S Platero, J Beane, ... Cancer prevention research 9 (2), 119-124, 2016 | 107 | 2016 |
| A graph-transformer for whole slide image classification Y Zheng, RH Gindra, EJ Green, EJ Burks, M Betke, JE Beane, ... IEEE transactions on medical imaging 41 (11), 3003-3015, 2022 | 84 | 2022 |
| Molecular subtyping reveals immune alterations associated with progression of bronchial premalignant lesions JE Beane, SA Mazzilli, JD Campbell, G Duclos, K Krysan, C Moy, ... Nature communications 10 (1), 1856, 2019 | 84 | 2019 |
| Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution GE Duclos, VH Teixeira, P Autissier, YB Gesthalter, MA Reinders-Luinge, ... Science advances 5 (12), eaaw3413, 2019 | 79 | 2019 |
| Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness ND Grubaugh, DR Smith, DE Brackney, AM Bosco-Lauth, JR Fauver, ... PLoS pathogens 11 (5), e1004874, 2015 | 61 | 2015 |
| Genomic approaches to accelerate cancer interception J Beane, JD Campbell, J Lel, J Vick, A Spira The lancet oncology 18 (8), e494-e502, 2017 | 55 | 2017 |
| Assessment of microRNA differential expression and detection in multiplexed small RNA sequencing data JD Campbell, G Liu, L Luo, J Xiao, J Gerrein, B Juan-Guardela, J Tedrow, ... Rna 21 (2), 164-171, 2015 | 50 | 2015 |
| Detecting the presence and progression of premalignant lung lesions via airway gene expression J Beane, SA Mazzilli, AM Tassinari, G Liu, X Zhang, H Liu, AD Buncio, ... Clinical Cancer Research 23 (17), 5091-5100, 2017 | 41 | 2017 |
